Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02413 ATGCAACATCAATCGTCTTCACCAAAACATTCCATTCTATCCTTCTACCAACTTTCTCTCTTTCCGATACTTCCAATTTCACCAAATTTCCGATTACTCTTCCCACCCCCCATACTTCCTCATCCAAACCCCAACTCCCCTTCTCTCTCTCACCGATATTCTCGTGAACGTTACGCTCACATCAGAATGAGTTTTCAAGACTTAGAATCCGGCCGCCGCAACCTAATCAACGGCAAACAAAACCCGACGCAGGCGGTTGCTTCCGGCGTATTTCAGATCAACACTGCCGTCTCCACTTTTCAGAGACTCGTCAACACACTCGGAACCCCCAAAGACACGCCGGAACTCCGCGAGAAACTGCATAAGACGAGACTTCATATTGGACAATTGGTGAAGGATACGTCGGATAGACTTAAACAAGCCAGTGAAATTGATCATCATGCCGATGTTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCCAAAGAATTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCGCAGCGTCTTTCAGCCGAGAGGGAGACAGCTTACGCTCCTTTTGTTCCTTTTGTTCCGCAAGATGCTCAGCCATCCAGCTATACAGTCAGTGGAGTAGGTGTTAGTTCGGATAAAAGTCAAGAACAGCGTGCCCTTGTGGAATCCAAAAGACAGGAGGTAATATCCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATCGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATTGGGGAAGTAAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGATCAAACATTGAGCATTCGCATGAAGCCACTGTCCAAGCAAAATCAGAACTTGTGAAAGCTTCTAAAACACAACGATCAAGCTCATCTTTGGTGTGCTTGCTTTTGGTGATATTTGGAGTCGTGCTTCTCATCATCATCATTGTTGTTGCTGCTTAG 999 0.4454 MQHQSSSPKHSILSFYQLSLFPILPISPNFRLLFPPPILPHPNPNSPSLSHRYSRERYAHIRMSFQDLESGRRNLINGKQNPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDRLKQASEIDHHADVNATKKIADAKLAKEFQAVLKEFQKAQRLSAERETAYAPFVPFVPQDAQPSSYTVSGVGVSSDKSQEQRALVESKRQEVISLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATVQAKSELVKASKTQRSSSSLVCLLLVIFGVVLLIIIIVVAA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02413 332 Gene3D - 77 190 - -
Vivi2g02413 332 CDD SynN 80 193 IPR006011 GO:0016020
Vivi2g02413 332 ProSitePatterns Syntaxin / epimorphin family signature. 245 284 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi2g02413 332 Pfam Syntaxin-like protein 87 186 IPR006011 GO:0016020
Vivi2g02413 332 SMART SynN_4 70 184 IPR006011 GO:0016020
Vivi2g02413 332 FunFam Syntaxin-22 like 77 190 - -
Vivi2g02413 332 SUPERFAMILY t-snare proteins 79 294 IPR010989 GO:0016020|GO:0016192
Vivi2g02413 332 PANTHER SYNTAXIN 83 325 IPR045242 -
Vivi2g02413 332 FunFam Syntaxin-22 like 232 332 - -
Vivi2g02413 332 Pfam SNARE domain 276 327 IPR000727 -
Vivi2g02413 332 Gene3D - 230 332 - -
Vivi2g02413 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 239 301 IPR000727 -
Vivi2g02413 332 CDD SNARE_Qa 259 300 - -
Vivi2g02413 332 SMART tSNARE_6 234 301 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02413 Vivi-Chr2 111056593 111059080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02413 63 320 SNARE and Associated Proteins AT5G46860 74.144 1.92e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02413 - - vvo:131651791 535.028