Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02409 ATGGACGGAGCCAGCGGCGTCACTGGCGGCGGAGAAGCCTCTGCCCAATTACCGGCGCCGACACCGATGCAAAACTCTAACTCGCCGCCTCCGTTCTTGAGTAAGACGTATGACATGGTGGACGACCCTTCGACTGACGCGATAGTTTCATGGAGCGCAACGAACAACAGTTTTGTCGTTTGGGACCCACCGGAATTCGCTCGGGACCTTTTGCCCAAGTACTTCAAACACAACAACTTCTCAAGCTTTGTGAGACAGTTGAATACATATGGTTTCCGGAAGGTCGACCCAGATCGCTGGGAATTCGCAAATGAGGGTTTTTTGAGGGGTCAAAAACACTTGCTTAAGAGTATAACTCGACGAAAACCTGCCCATGGCAATAATCATCAACCTGCTCAACAACCACCTGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTCGGGAAATTTGGACTTGAGGAAGAGGTTGAGCGGCTGAAAAGAGACAAGAATGTTCTGATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAAACCACTGATAACCAGCTGCAAACAATGGTTCAACGCCTTCAGGGAATGGAGCAACGGCAACAGCAAATGATGTCATTCCTTGCCAAAGCTGTCCAAAGTCCTGGCTTCTTTGCTCAGTTTGTGCAACAGCAAAATGACAGCAATAGGCGCATAACCGAAGTCAACAAAAAGCGTAGGCTCAAACAGGAAGGTATTGCTGAAACAACAGAACGAGCTGCCCCTGCTGATGGACAAATTATTAAATATCAACCTCAGATGAATGAAACAGCAAAAGCAATGCTAAGAAAGATCATGAAATGGGATACTCCTCGTGTAGAATCTTTCAATAAAAATCCTGATAATTACTTGATTGGTGACGGTACATCCCCATCCAATGCAATGGACAGTAGTAGCTCTTCAAACTGGAATTCCGGAGTAACTCTTCAAGAAGTTCCTCCATCTTCAGTGCAGTCTTCTCACATTCCAGCTGCAACAGGAGCTCAACGACACGTGCCTTCGGCAGATGTACCTCAAGCTGCAGCATCTGAAAATGTCATGTTGGATGGAGCACATACAGCACCGACTATCCCGAATTCTCAAGCAGATGTTATCATGCCTGATATATCTTCTATACCAGAGATTGTGCCAAGAAGTATTCTCGATATTCCCGAAGACAATTATATGGCTCCTGAGACAGATGATGGATTTATGGATCCAACTTCACTTGGGTCATTTCCCATTGATTTTGAAGCTCTTTCACCCGGTGCAGACATTGATGAATTGTTAAACAATCCTTCTATTTGGGAGGATCTTCTGCAAACTCCACTTCCAGAGGATCTTGAGAACAACGTTGACGAAATATCCAGAGGGAATGAGCTGCAGCCAACAGAAAATGGATGGGAAAATACTCAACGTCTGGATCAACTAACAGAGCAGATGGGTCTTCTTTCTTCTGAGTCCAAAAGATTATAA 1488 0.4556 MDGASGVTGGGEASAQLPAPTPMQNSNSPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGNNHQPAQQPPGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQEGIAETTERAAPADGQIIKYQPQMNETAKAMLRKIMKWDTPRVESFNKNPDNYLIGDGTSPSNAMDSSSSSNWNSGVTLQEVPPSSVQSSHIPAATGAQRHVPSADVPQAAASENVMLDGAHTAPTIPNSQADVIMPDISSIPEIVPRSILDIPEDNYMAPETDDGFMDPTSLGSFPIDFEALSPGADIDELLNNPSIWEDLLQTPLPEDLENNVDEISRGNELQPTENGWENTQRLDQLTEQMGLLSSESKRL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02409 495 MobiDBLite consensus disorder prediction 122 141 - -
Vivi2g02409 495 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g02409 495 Gene3D - 24 122 IPR036388 -
Vivi2g02409 495 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g02409 495 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g02409 495 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g02409 495 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 308 IPR027725 -
Vivi2g02409 495 MobiDBLite consensus disorder prediction 293 336 - -
Vivi2g02409 495 MobiDBLite consensus disorder prediction 290 346 - -
Vivi2g02409 495 FunFam Heat shock transcription factor 1 25 122 - -
Vivi2g02409 495 SUPERFAMILY "Winged helix" DNA-binding domain 27 121 IPR036390 -
Vivi2g02409 495 MobiDBLite consensus disorder prediction 1 31 - -
Vivi2g02409 495 Coils Coil 150 177 - -
Vivi2g02409 495 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g02409 495 MobiDBLite consensus disorder prediction 124 141 - -
Vivi2g02409 495 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02409 Vivi-Chr2 111033157 111038263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02409 9 495 HSF AT1G32330 54.207 2.65e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi2g02409 HSF_DNA-bind 2.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02409 K09419 - gmx:100794897 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02409 2 111033157 111038263 Vivi2g02409 2 111033157 111038263 ECH