Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02397 ATGGAATCTAATAAGGAAGGTGATGAGAGAAAAAAGGAACATAAAGTTCCTTTCTTAAAGCTGTTTTCTTTTGCTGACTCCTATGATTATGTTTTGATGTTTATTGGATCTATTGGAGCATGTGTTCATGGTGCTTCTATTCCTGTTTTCTTCATCTTCTTTGGAAAGTTGATCAATGTTATTGGTTTGGCTTATCTTTTTCCTAAGGAAGCTTCTCACCAAGTTGCCAAGTACTCATTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGAGAAAGACAAGCAGCAAAAATGAGAATGGCTTATTTAAAATCAATGTTGAATCAAGATATAAGTTTATTTGATACTGAGGCTTCAACTGGTGAAGTTATTTCTGCAATTACAAGTGATATTATTATTGTTCAAGATGCTCTATCTGAGAAGGTAGGAAACTTCATGCACTACATAAGCAGATTCATAGCTGGCTTTACAATTGGCTTTGTAAGAGTATGGCAGATTAGTCTAGTAACACTTTCAATTGTTCCCTTAATTGCACTTGCTGGAGGTCTTTATGCATATGTCACAATTGGCCTCATTGCAAAAGTTAGAAAAGCATATGTTAGAGCTGGTGAAATTGCTGAAGAGGTGATAGGAAATGTTAGAACTGTACAAGCTTTTGCAGGAGAAGAAAGAGCTGTGAAATCATATAAAGCAGCTCTTATGAAAACTTATGTAAATGGTAGAAAAGCTGGTTTGGCAAAGGGTCTTGGACTTGGTTCAATGCATTGTGTTCTTTTTCTATCTTGGTCTTTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATCGCCAATGGCGGCGAGTCTTTCACTACCATGCTTAACGTCGTTATCTCCGGCCTGTCACTTGGGCAGGCAGCACCGGATATCTCAGCGTTTATCCGAGCTAAGGCTGCTGCTTATCCGATTTTTAAGATGATAGAGAGGGATACAGTGAGCAAACAAAGCTCAAAAACCGGTCGAAAATTAAACAAAGTGGAGGGACATATCCAGTTTAAGAATGTGTGTTTCAGTTATCCGTCTCGTCCGGATGTAGCTATCTTCAACAACTTCAATCTCGACATTCCTGCAGGGAAAATTATTGCACTTGTAGGAGGGAGTGGTTCTGGAAAGAGCACAGTTGTATCGTTGATCGAACGTTTTTATGAACCTCTTTCAGGTCATATACTTTTAGACAAGAATGAAATCAGAGAACTTGATCTCAAGTGGCTTAGGCAACAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCAACAAGCATCAAGGAGAATATTTTGTATGGGAAAGATGATGCTACTCTTGAAGAACTAAAACGCGCCGTGAAGCTTTCAGATGCTCAATCTTTCATCAACAATCTTCCGGAACGATTAGACACTCGGGTTGGTGAGAGAGGGATACAACTATCAGGTGGACAGAAGCAAAGGATTGCGATATCTCGTGCCATTGTGAAGAATCCGTCTATCCTTTTACTAGATGAAGCAACTAGTGCTCTTGATGCTGAGTCCGAGAAAAGTGTACAAGAGGCTCTCGATCGTGTCATGGTTGGAAGAACAACCATTGTAGTTGCACACAGGCTTTCTACCATTAGGAATGCAGATGTTATAGCTGTTGTACAAGGAGGGAAAATTGTGGAGACTGGTAACCATGAAGAACTCATGTCTAACCCAGCTAGTGTTTATTCATCTCTTGTTCAACTCCAAGGTGCATCTTCTTTGCAAGGGCTTCCCGCAGTTGGTCCTAGCTTAGGACGCCAATCAAGCGTGGGCTACTCAAAAGAATTTTCGCGTGCAACAACAAGCATTGGTGGTAGTTTTCGATCGGACAAAGACTCGATTGGCCTTGTCGGTGGTGATGATGGAAGCAAGACTAAGCATGTTTCAGCAAAAAGACTATATTCTATGGTTGGTCCTGATTGGCCTTATGGAGTTTTTGGGACCTTATGTGCATTTATTGCTGGAGCACAAATGCCACTTTTTGCACTTGGAATCTCTCATGCTCTTGTTTCATATTATATGGATTGGGATACAACGCGTCACGAAGTTAAAAAAATTGCTTTCCTCTTCTGTGGAGGTGCAGTTATAACTGTCATAGTCCATGCCATTGAACATCTCTTCTTCGGTATCATGGGCGAGCGACTTACTCTTCGTGTGCGAGAAAAGATGTTTAGTGCTATTTTGAAGAATGAAATCGGATGGTTTGATGAAACAGGCAACACAAGCTCTATGCTTTCATCGCGTTTAGAATCCGACGCAACTTTAATGCGAACAATAGTTGTTGATCGCTCCACGATTCTGTTACAGAATGTTGGTCTGGTTGTTGCTTCTTTTATTATTGCCTTCCTATTGAACTGGAGAATCACACTTGTTGTCTTGGCCACATATCCTTTGATAGTTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGTGAGGCCGTGAGCAACATACGCACTGTCGCCGCATTTTGCTCTGAAGAAAAGGTCCTTGATCTTTATGCTAACGAGCTCGTCGGTCCTTCCAAAAATTCATTTCGACGCGGTCAAATTGCCGGCATATTCTATGGCATTTCCCAGTTCTTCATCTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCAGTTTTGATGGGAAAGGAGCTAGCTAGCTTTAAATCAGTTATGAAGTCATTTATGGTTTTAATCGTAACAGCGCTTGCTATGGGGGAAACTTTGGCACTAGCACCAGACCTTTTGAAAGGGAACCAAATGGTTGCATCAGTTTTTGAAGTAATGGATAGAAAATCAGAAATAAGAGGTGATACTGGAGAAGAGTTAAGGACAGTGGAAGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGACCAGATGTGATTATTTTCAAGGATTTCAATCTTAGAGTTCCTTCAGGAAAAAGTGTTGCTCTAGTGGGACAAAGTGGTTCTGGTAAAAGCTCCGTGATCTCTATTATACTCAGATTTTATGATCCATCTTCAGGAAAGGTGTTAATTGATGGTAAAGACATCACAAGAATAAATCTAAAATCACTTCGAAAACACATTGGTCTAGTGCAACAAGAACCGGCCCTTTTCGCCACATCAATTTACGAAAACATTCTCTATGGAAAAGAAGGCGCGTCTGATTCAGAAGTAATCGAAGCGGCCAAGCTAGCAAACGCGCATAACTTCATAAGTGGACTTCCAGAAGGTTACTCAACCAAAGTAGGTGAAAGAGGTGTTCAACTTTCCGGTGGACAAAGACAAAGAGTAGCCATTGCTAGAGCTGTTCTAAAGAATCCTGAAATCTTGCTACTTGATGAAGCTACCAGTGCACTCGACGTTGAATCGGAGCGAATCGTACAACAAGCTCTTGACAGATTAATGCAGAACAGAACAACTGTTATGGTGGCACATAGGTTGTCCACAATAAGAAATGCAGATCAAATCTCGGTTTTGCAGGACGGAAAGATTATTGAGCAAGGAACACATTCAAGTCTTATAGAGAATAAAAATGGACCGTATTATAAATTAGTCAATCTTCAACAGCAACAGCAACATCAATCCTAA 3708 0.4045 MESNKEGDERKKEHKVPFLKLFSFADSYDYVLMFIGSIGACVHGASIPVFFIFFGKLINVIGLAYLFPKEASHQVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFKMIERDTVSKQSSKTGRKLNKVEGHIQFKNVCFSYPSRPDVAIFNNFNLDIPAGKIIALVGGSGSGKSTVVSLIERFYEPLSGHILLDKNEIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPERLDTRVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTIVVAHRLSTIRNADVIAVVQGGKIVETGNHEELMSNPASVYSSLVQLQGASSLQGLPAVGPSLGRQSSVGYSKEFSRATTSIGGSFRSDKDSIGLVGGDDGSKTKHVSAKRLYSMVGPDWPYGVFGTLCAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGGAVITVIVHAIEHLFFGIMGERLTLRVREKMFSAILKNEIGWFDETGNTSSMLSSRLESDATLMRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVLATYPLIVSGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVGPSKNSFRRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSEIRGDTGEELRTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPSGKSVALVGQSGSGKSSVISIILRFYDPSSGKVLIDGKDITRINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGPYYKLVNLQQQQQHQS 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02397 1235 Pfam ABC transporter transmembrane region 33 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g02397 1235 Pfam ABC transporter transmembrane region 672 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g02397 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g02397 1235 CDD ABC_MTABC3_MDL1_MDL2 990 1227 - -
Vivi2g02397 1235 Gene3D - 347 614 IPR027417 -
Vivi2g02397 1235 Pfam ABC transporter 376 524 IPR003439 GO:0005524
Vivi2g02397 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 357 593 IPR003439 GO:0005524
Vivi2g02397 1235 SMART AAA_5 384 570 IPR003593 GO:0016887
Vivi2g02397 1235 SMART AAA_5 1017 1203 IPR003593 GO:0016887
Vivi2g02397 1235 Pfam ABC transporter 1009 1157 IPR003439 GO:0005524
Vivi2g02397 1235 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 330 - -
Vivi2g02397 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 671 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g02397 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 595 IPR027417 -
Vivi2g02397 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 990 1226 IPR003439 GO:0005524
Vivi2g02397 1235 FunFam ABC transporter B family member 2 791 987 - -
Vivi2g02397 1235 CDD ABC_MTABC3_MDL1_MDL2 357 595 - -
Vivi2g02397 1235 SUPERFAMILY ABC transporter transmembrane region 21 327 IPR036640 GO:0005524|GO:0016020
Vivi2g02397 1235 FunFam ABC transporter B family member 1 20 356 - -
Vivi2g02397 1235 FunFam ABC transporter B family member 4 347 600 - -
Vivi2g02397 1235 SUPERFAMILY ABC transporter transmembrane region 657 974 IPR036640 GO:0005524|GO:0016020
Vivi2g02397 1235 FunFam ABC transporter B family member 4 980 1234 - -
Vivi2g02397 1235 Gene3D - 981 1235 IPR027417 -
Vivi2g02397 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1228 IPR027417 -
Vivi2g02397 1235 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524|GO:0016887
Vivi2g02397 1235 CDD ABC_6TM_Pgp_ABCB1_D2_like 660 975 - -
Vivi2g02397 1235 PANTHER ABC TRANSPORTER B FAMILY 3 594 IPR039421 -
Vivi2g02397 1235 ProSitePatterns ABC transporters family signature. 1129 1143 IPR017871 GO:0005524|GO:0016887
Vivi2g02397 1235 Gene3D ABC transporter type 1, transmembrane domain 20 959 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02397 Vivi-Chr2 110742117 110749898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02397 16 1234 Calmodulin-binding Proteins AT2G36910 50.240 0.0 1217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02397 K05658 - gmx:100819045 2144.39