Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02392 ATGGGTAGGTCACCATGTTGTGATGAAATTGGTGTCAAGAAAGGGCCATGGACAGAAGAAGAAGATGAGAAGTTGATTGATTATATCAACAAACATGGCCATGGAAATTGGGGAACACTTTCGAAACGTGCCGGTTTGAATAGGTGTGGGAAGAGTTGTAGGTTAAGGTGGACAAATTATTTGAGACCTGATATTAAGAGAGGAAAATTCACCGATGAAGAAGAAAGAATCATCATCAACCTTCATTCAGTACTCGGAAACAAGTGGTCTAAGATTGCAGGTCATCTTCCGGGTCGAACAGATAACGAGATAAAGAATTTTTGGAACACAAACATAAGGAAGAAGCTTTTGAAGATGGGAATTGACCCTGAAACTCATAAGCCAAGAACTGATTATAGTCACCTCATGAGTATTTCCAACTTACTTGGAATTTCAAATATAGGCAACACTTTTAGCAACAACCCTATTGGTTTTCAGCCAGACATTACTCACATAGCCAAAATGCAATTGTTGCAAAATATGTTACAAATTATGAACACCAATAATTCATTTGCTATGAACCCTTATAGCTCTTTAGGAAATATTATTCCTAGTCTTAATCCATTCAATGTGTTTTTGAATGGAGCAAACACAATTCAAAAGGAGCCATTATTAGGTTTGAATGGTGGTGAAGAATATGCTATGAACCCTAGTTTATACTCTCATGGAGTAATAAGCGAGTCTTCTAAGCAAGATATTTCAAATGGTGGATCAAGTTTACAAAATCTTGATTATAGCAAAATGAGAAGCAATAATCAAGATGAAAATCCACTTCCTGCTTTGGTTGCTTCCTCTCCTAAAACAAGTTTCAATCAAATGGAAAGTGATTGTAACAAAGCTCAAATGTCCATTCAATCACCTTCAAACATAGTCTTTGAAGATTGGGAGAAGTTCATTGATGAATCAAGTGATTCCTACTGGAAAGAGCTTTTAGACTTGACATGCACTTCTCCATCAAAAATTCCATGGTAG 1011 0.364 MGRSPCCDEIGVKKGPWTEEEDEKLIDYINKHGHGNWGTLSKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTDEEERIIINLHSVLGNKWSKIAGHLPGRTDNEIKNFWNTNIRKKLLKMGIDPETHKPRTDYSHLMSISNLLGISNIGNTFSNNPIGFQPDITHIAKMQLLQNMLQIMNTNNSFAMNPYSSLGNIIPSLNPFNVFLNGANTIQKEPLLGLNGGEEYAMNPSLYSHGVISESSKQDISNGGSSLQNLDYSKMRSNNQDENPLPALVASSPKTSFNQMESDCNKAQMSIQSPSNIVFEDWEKFIDESSDSYWKELLDLTCTSPSKIPW 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02392 336 CDD SANT 69 112 IPR001005 -
Vivi2g02392 336 Gene3D - 13 66 - -
Vivi2g02392 336 CDD SANT 16 61 IPR001005 -
Vivi2g02392 336 SMART sant 66 114 IPR001005 -
Vivi2g02392 336 SMART sant 13 63 IPR001005 -
Vivi2g02392 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g02392 336 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vivi2g02392 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g02392 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g02392 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi2g02392 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi2g02392 336 FunFam Transcription factor MYB39 69 130 - -
Vivi2g02392 336 FunFam MYB-related transcription factor 13 66 - -
Vivi2g02392 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 281 - -
Vivi2g02392 336 Gene3D - 68 134 - -
Vivi2g02392 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02392 Vivi-Chr2 110548438 110550464 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02392 1 325 MYB Transcription Factor Family AT5G16770 47.647 2.43e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g02392 Myb_DNA-binding 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02392 K09422 - gmx:778082 435.261