Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02389 ATGGCTAAAAAGAAACAGAAGGAGCCGCAACAAACCCCTAAAAACGACACCGTCTCATCCTCTTCCAGCGTTTTCGATGTTCTCTTCGGCAACGCGCCGGAACAGATAACCGGCACCGCCGCTTCTCTATTTTCCGATGACAACCCCTTTAAGAGGAAACCACCACAACCTGCTCTAATTTCCGACGTTACCGATCACACTCCAAACTCCGAAAACGGCGATGTAGATGAAAAGAAGAGAAAGAGGAACAAAGAGAAAAACCCCGTGCTTGATTCAAATTCTGCAATCAAAGTTTCAGAGAAGAAGAAAAAGAAGAAAAGTGGGTTGAACGAGAAGGAAGGGGAAGAGAAAGAGAAAGAGCATATTTTGGATGTAGAAACGATTGGGAAGGAGAAGAAGAAGAGGAAAAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTAAGGGAGGAGATAAGGATGAAAGGGAAGGGTTTGAGAATGAAAAAGTTGGGAGCAAGAGAAAAGTGCGTGATAATCCAGCTGATATGATGGTCTCAAAGAAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGAAATTTGCCTCTTAAGGTGAAAAAGAAGACTTTGTTGAATGAGTTTAAGAAATTTGGTGAGGTTGAATCTGTTAGGATTCGCTCTGTTCCTTTGCAAGATACTAAAATACCTAGAAAGGGAGCCATCCTTGCGAAGAAGATCCATGAGTTGGCTGAAAGTGTCAATGCTTACATTGTTTTCAAAACTGAGGAATCTGCCCAGGCTTCATTGGCCCACAACATGACTGTGGTTGAAGGATTCCACATTCGTGTTGACAGGGCATGCCCGCCCCGCAAGAAACTTAAAGGGGATACTTCTCAGCTCTATGATAATAAGAGAACTGTTTTTGTGGGTAATCTCCCATTTGATGTAAAGGATGAAGAACTTTATCAGCTATTTGGTGGTATACCAAATCTAGAATCAAGTGTAGAAGCTATAAGAGTTGTTCGAGATCCTCATCTTAATGTGGGAAAGGGAATTGCTTATGTGCTATTTAAAACAAGGGAAGCTGCCAATTCTATTGTTAATAAACGATCCTTGAATCTTCGAGATCGAGCATTGAGACTTAGTCGTGCCAACACAAATGCTGCTACTACCCCATCTAAAAGGCCGGACTCTCCAGGGGCACGACTGACTCATGGCAAACCAAATGCTACTCCATCTAAAAGGCCATACACTCCAGCAGCACAAGCTCATAGGACCCCTGTGAAGAAGTTTTCAGCTGCTTCAAAGTCTCCTTCAAGCAGTAAAAACGGGTCCAACAGAAAAACTACTGCATCTTATCAGGGTCTGCGTGCAACCAAGTCTGATGTCTTCAAGAAAAGTCATGGTGGAGAAAAACCAAAAGTGCGCACACAGAAAAGACCAACAGTAGCTGCCAGAAAGGCTAAAGCAAAAGTGCAGCAGGAGGGTGGTACACCCAAACATGCAGGGTCAAAAGGTACACCAAAGAAAGCAGGGTCAAAAGGTACACCAAAACAAGCAGGGTCAAAACGCAAGTTTGATAGTCGAACTCCTGATAGCTCCGGACGAGTTATGAAAGCACAAAAGAAATGGTAG 1641 0.4321 MAKKKQKEPQQTPKNDTVSSSSSVFDVLFGNAPEQITGTAASLFSDDNPFKRKPPQPALISDVTDHTPNSENGDVDEKKRKRNKEKNPVLDSNSAIKVSEKKKKKKSGLNEKEGEEKEKEHILDVETIGKEKKKRKRDEVEKEWEEKKYGIVKGGDKDEREGFENEKVGSKRKVRDNPADMMVSKKGFDDEDKLLRTIFVGNLPLKVKKKTLLNEFKKFGEVESVRIRSVPLQDTKIPRKGAILAKKIHELAESVNAYIVFKTEESAQASLAHNMTVVEGFHIRVDRACPPRKKLKGDTSQLYDNKRTVFVGNLPFDVKDEELYQLFGGIPNLESSVEAIRVVRDPHLNVGKGIAYVLFKTREAANSIVNKRSLNLRDRALRLSRANTNAATTPSKRPDSPGARLTHGKPNATPSKRPYTPAAQAHRTPVKKFSAASKSPSSSKNGSNRKTTASYQGLRATKSDVFKKSHGGEKPKVRTQKRPTVAARKAKAKVQQEGGTPKHAGSKGTPKKAGSKGTPKQAGSKRKFDSRTPDSSGRVMKAQKKW 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02389 546 PANTHER OS02G0815200 PROTEIN 91 387 - -
Vivi2g02389 546 MobiDBLite consensus disorder prediction 39 140 - -
Vivi2g02389 546 Gene3D - 192 295 IPR012677 -
Vivi2g02389 546 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g02389 546 CDD RRM1_RBM34 196 286 - -
Vivi2g02389 546 SMART rrm1_1 197 286 IPR000504 GO:0003723
Vivi2g02389 546 SMART rrm1_1 308 384 IPR000504 GO:0003723
Vivi2g02389 546 MobiDBLite consensus disorder prediction 69 88 - -
Vivi2g02389 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 290 IPR000504 GO:0003723
Vivi2g02389 546 MobiDBLite consensus disorder prediction 434 459 - -
Vivi2g02389 546 Gene3D - 296 395 IPR012677 -
Vivi2g02389 546 SUPERFAMILY RNA-binding domain, RBD 301 406 IPR035979 GO:0003676
Vivi2g02389 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 388 IPR000504 GO:0003723
Vivi2g02389 546 SUPERFAMILY RNA-binding domain, RBD 188 296 IPR035979 GO:0003676
Vivi2g02389 546 MobiDBLite consensus disorder prediction 385 546 - -
Vivi2g02389 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 380 IPR000504 GO:0003723
Vivi2g02389 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 230 IPR000504 GO:0003723
Vivi2g02389 546 MobiDBLite consensus disorder prediction 104 140 - -
Vivi2g02389 546 MobiDBLite consensus disorder prediction 463 480 - -
Vivi2g02389 546 MobiDBLite consensus disorder prediction 522 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02389 Vivi-Chr2 110459346 110463939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02389 176 386 Eukaryotic Initiation Factors Gene Family AT1G22760 27.602 9.19e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02389 K14837 - gmx:100809622 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02389 2 110459346 110463939 Vivi2g02389 2 110459346 110463939 ECH