Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02383 ATGGCCACCTTAGAATCAGCCATAACTGTATTCGCACCTCAACGTTTTCCAAATAACTACCGTTTCCTCGTTAAATCACCCGATTCTGTCAAACTCTCAACCACTTCATTCTCTTCTTCTATATTCTCTCATAGCCACAATAAACTTCACTTATCTTCTTTCAGAACCCGAACACCATGCTTCGCTTTACAAGAGGTAACAGAAGCAACAATTGAAGATGAAAAAATAGAAGAAACAGAGACATTAAACATCGATAAGAAGAAGATTGCTGTATTTAACTTACCTTGGTCACAGTCTGCGGCAGACATTAAGGAACTCTTCGCGGAATGTGGAACCGTAACCGACGTTAAGGTTATAAAAGGAAAAGATAGAAAGGGCAAAGGTTATGCATTTGTTACTATGGATTCTGCAGAAGAGGCTCAGGCTGCTGTTGATCAATTTAATGCTCGTGAAATATCAGGCCGGATAATAAGGGTAGAGTTTGCAAGGAGTTTAAAGAAACCTTCTCCTTCACCTCCTCCAGGCACCCCTCCAAGTCCCGCTCCTATCGAAGCACGTTTTGTAATTTATACATCCAATCTTGCATGGAAAGCAAGATCTACACATCTTAGAGACATCTTCGCCGAGAATTTCAAAGCACCAGTTTCAGCCAGGGTCGTCTTTCAAACCCCTGCTGGCAGATCTGCCGGGTATGGATTCGTTTCTTATCACACGGTGGAGGAAGCAGAGGCTGCCATTTCTGCCTTGGAAGGGAAGGAGTTACTAGGACGACCACTTCGTGTAAAAATAAGTGAAAAGAAAGTTAAAGAAGCTAGTAATGAAGAAGGTGAAAAACAAGATGCTGATGCTCAAGTAGAAGGTGAAAACCAAAATGCTGATGCTCAAGTAGAAGTTGAAAACCAAAATGCTGATGCTCAACTAGAAGGTGAAAACCAAAATGCTGATACTCAACTAGAAGAATCATAA 966 0.4141 MATLESAITVFAPQRFPNNYRFLVKSPDSVKLSTTSFSSSIFSHSHNKLHLSSFRTRTPCFALQEVTEATIEDEKIEETETLNIDKKKIAVFNLPWSQSAADIKELFAECGTVTDVKVIKGKDRKGKGYAFVTMDSAEEAQAAVDQFNAREISGRIIRVEFARSLKKPSPSPPPGTPPSPAPIEARFVIYTSNLAWKARSTHLRDIFAENFKAPVSARVVFQTPAGRSAGYGFVSYHTVEEAEAAISALEGKELLGRPLRVKISEKKVKEASNEEGEKQDADAQVEGENQNADAQVEVENQNADAQLEGENQNADTQLEES 321
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02383 321 Coils Coil 300 321 - -
Vivi2g02383 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Vivi2g02383 321 MobiDBLite consensus disorder prediction 267 284 - -
Vivi2g02383 321 SMART rrm1_1 188 262 IPR000504 GO:0003723
Vivi2g02383 321 SMART rrm1_1 88 160 IPR000504 GO:0003723
Vivi2g02383 321 MobiDBLite consensus disorder prediction 267 321 - -
Vivi2g02383 321 Coils Coil 271 291 - -
Vivi2g02383 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Vivi2g02383 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 260 IPR000504 GO:0003723
Vivi2g02383 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 157 IPR000504 GO:0003723
Vivi2g02383 321 MobiDBLite consensus disorder prediction 285 314 - -
Vivi2g02383 321 PANTHER OS02G0815200 PROTEIN 29 267 - -
Vivi2g02383 321 CDD RRM_SF 91 160 - -
Vivi2g02383 321 SUPERFAMILY RNA-binding domain, RBD 87 266 IPR035979 GO:0003676
Vivi2g02383 321 Gene3D - 62 168 IPR012677 -
Vivi2g02383 321 Gene3D - 169 275 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi2g02383 Vivi-Chr2 110114197 110116896 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02383 89 267 Eukaryotic Initiation Factors Gene Family AT4G34110 29.949 5.26e-15 73.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02383 - - vum:124843240 291.967
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02383 2 110114197 110116896 Vivi2g02383 2 110114197 110116896 ECH