Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g02383 | ATGGCCACCTTAGAATCAGCCATAACTGTATTCGCACCTCAACGTTTTCCAAATAACTACCGTTTCCTCGTTAAATCACCCGATTCTGTCAAACTCTCAACCACTTCATTCTCTTCTTCTATATTCTCTCATAGCCACAATAAACTTCACTTATCTTCTTTCAGAACCCGAACACCATGCTTCGCTTTACAAGAGGTAACAGAAGCAACAATTGAAGATGAAAAAATAGAAGAAACAGAGACATTAAACATCGATAAGAAGAAGATTGCTGTATTTAACTTACCTTGGTCACAGTCTGCGGCAGACATTAAGGAACTCTTCGCGGAATGTGGAACCGTAACCGACGTTAAGGTTATAAAAGGAAAAGATAGAAAGGGCAAAGGTTATGCATTTGTTACTATGGATTCTGCAGAAGAGGCTCAGGCTGCTGTTGATCAATTTAATGCTCGTGAAATATCAGGCCGGATAATAAGGGTAGAGTTTGCAAGGAGTTTAAAGAAACCTTCTCCTTCACCTCCTCCAGGCACCCCTCCAAGTCCCGCTCCTATCGAAGCACGTTTTGTAATTTATACATCCAATCTTGCATGGAAAGCAAGATCTACACATCTTAGAGACATCTTCGCCGAGAATTTCAAAGCACCAGTTTCAGCCAGGGTCGTCTTTCAAACCCCTGCTGGCAGATCTGCCGGGTATGGATTCGTTTCTTATCACACGGTGGAGGAAGCAGAGGCTGCCATTTCTGCCTTGGAAGGGAAGGAGTTACTAGGACGACCACTTCGTGTAAAAATAAGTGAAAAGAAAGTTAAAGAAGCTAGTAATGAAGAAGGTGAAAAACAAGATGCTGATGCTCAAGTAGAAGGTGAAAACCAAAATGCTGATGCTCAAGTAGAAGTTGAAAACCAAAATGCTGATGCTCAACTAGAAGGTGAAAACCAAAATGCTGATACTCAACTAGAAGAATCATAA | 966 | 0.4141 | MATLESAITVFAPQRFPNNYRFLVKSPDSVKLSTTSFSSSIFSHSHNKLHLSSFRTRTPCFALQEVTEATIEDEKIEETETLNIDKKKIAVFNLPWSQSAADIKELFAECGTVTDVKVIKGKDRKGKGYAFVTMDSAEEAQAAVDQFNAREISGRIIRVEFARSLKKPSPSPPPGTPPSPAPIEARFVIYTSNLAWKARSTHLRDIFAENFKAPVSARVVFQTPAGRSAGYGFVSYHTVEEAEAAISALEGKELLGRPLRVKISEKKVKEASNEEGEKQDADAQVEGENQNADAQVEVENQNADAQLEGENQNADTQLEES | 321 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g02383 | 321 | Coils | Coil | 300 | 321 | - | - | |
Vivi2g02383 | 321 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 266 | IPR000504 | GO:0003723 | |
Vivi2g02383 | 321 | MobiDBLite | consensus disorder prediction | 267 | 284 | - | - | |
Vivi2g02383 | 321 | SMART | rrm1_1 | 188 | 262 | IPR000504 | GO:0003723 | |
Vivi2g02383 | 321 | SMART | rrm1_1 | 88 | 160 | IPR000504 | GO:0003723 | |
Vivi2g02383 | 321 | MobiDBLite | consensus disorder prediction | 267 | 321 | - | - | |
Vivi2g02383 | 321 | Coils | Coil | 271 | 291 | - | - | |
Vivi2g02383 | 321 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 87 | 164 | IPR000504 | GO:0003723 | |
Vivi2g02383 | 321 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 260 | IPR000504 | GO:0003723 | |
Vivi2g02383 | 321 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 90 | 157 | IPR000504 | GO:0003723 | |
Vivi2g02383 | 321 | MobiDBLite | consensus disorder prediction | 285 | 314 | - | - | |
Vivi2g02383 | 321 | PANTHER | OS02G0815200 PROTEIN | 29 | 267 | - | - | |
Vivi2g02383 | 321 | CDD | RRM_SF | 91 | 160 | - | - | |
Vivi2g02383 | 321 | SUPERFAMILY | RNA-binding domain, RBD | 87 | 266 | IPR035979 | GO:0003676 | |
Vivi2g02383 | 321 | Gene3D | - | 62 | 168 | IPR012677 | - | |
Vivi2g02383 | 321 | Gene3D | - | 169 | 275 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g02383 | Vivi-Chr2 | 110114197 | 110116896 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g02383 | 89 | 267 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.949 | 5.26e-15 | 73.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g02383 | - | - | vum:124843240 | 291.967 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi2g02383 | 2 | 110114197 | 110116896 | Vivi2g02383 | 2 | 110114197 | 110116896 | ECH |