Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02382 ATGGCTTCTCTTGGAAATCCAAAAGCTTGGGTTCCATATATGAACAACAAAGATTGTTCTCAAGGTTTTTGTAGCTTCTATTGTCCACAATGGTGTTATGCAATTTACCCTCCACCTCCACCTTCTCCCTTTGAATTCCCTGATGATGATTCAAGTTCAAATTTCTCTCCTCTTGTTATTGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTCACTTACTACACCATAATCTCCAAATACTGCGGCCGAAGAGTATCATCGTCACAAAGCGAATCGCGTGAAACAAGCGATGAATTCGAAGACAATCATCATCATAATCATTCAATCCATGAGCCATGGCATCTTACAACAAATGGCTTAGATGAAGCTTTGATCAAATCAATTACAGTTTGCAAGTACAAAAAGAATGATGGATTGGTTGATGTAACGGATTGTTCCGTTTGTCTCAACGAGTTTCAAGACGATGAAAGTATTCGACTTTTACCTAAATGCAGCCATGCTTTTCATCTTCCTTGTATTGATACATGGCTCAAATCTCACTCAAATTGTCCTCTTTGTCGCGCTACCATATTCGCCTTCAACGCTTCAAGTTCAAGTGCAACAACACTTCATTTAGCAGCACCGGTTATTGAACAATCTTCAAGGAATGAAGTTTCTTTAGAAAATCAACAACTGAATGAAATTGTAGATGTTGAAAGTAACAATGAATTGCATGAAGTGGAAGAAGTTCCAATTCCAAAGAGTGAATTTCGCGCTTTAAGCGACTTAGGAAATTTAAGAGGAAGGCATAGTGTGATTGAGATTAGAGATAATGAAGACTATCACGAATCGATTCGAAGATCGATTTCTATGGATCATTCATTTCAAAGTGGCATTTCAGTTGTTGATGATGTTAATGTTATGCATATGAATCAAGAGCAAGATTGTTCTCAAGTTGAAGGTTCATCAAAGAGAGTAAGAGATGAAAGTGAAAGTAGTAAGTGTAGTTATAGAAGAAAGGTTTTGCATTGTGTTATGAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTCCTTAGTAGAAATGGTAGAGGAAGGCTTGGAATCTTGCATGTTTGA 1113 0.3702 MASLGNPKAWVPYMNNKDCSQGFCSFYCPQWCYAIYPPPPPSPFEFPDDDSSSNFSPLVIAIIGILASAFLLVTYYTIISKYCGRRVSSSQSESRETSDEFEDNHHHNHSIHEPWHLTTNGLDEALIKSITVCKYKKNDGLVDVTDCSVCLNEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNASSSSATTLHLAAPVIEQSSRNEVSLENQQLNEIVDVESNNELHEVEEVPIPKSEFRALSDLGNLRGRHSVIEIRDNEDYHESIRRSISMDHSFQSGISVVDDVNVMHMNQEQDCSQVEGSSKRVRDESESSKCSYRRKVLHCVMSPIAMKRSFSSGRFFLSRNGRGRLGILHV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02382 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Vivi2g02382 370 PANTHER RING-H2 FINGER PROTEIN ATL16 43 327 IPR044600 GO:0016567|GO:0016740
Vivi2g02382 370 FunFam RING-H2 finger protein ATL54 122 195 - -
Vivi2g02382 370 SMART ring_2 147 188 IPR001841 -
Vivi2g02382 370 SUPERFAMILY RING/U-box 126 194 - -
Vivi2g02382 370 Pfam Ring finger domain 146 189 IPR001841 -
Vivi2g02382 370 CDD RING-H2_EL5-like 146 189 - -
Vivi2g02382 370 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02382 Vivi-Chr2 110110352 110112010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02382 1 329 C3H Transcription Factor Family AT3G03550 43.714 1.42e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02382 - - gmx:100792267 453.751