Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02354 ATGTCTCCGGCTGTGGTTGTTATGGAGGAGGAAGGGCGGAGCAAACTGTCGTCGACGGTGGTTTCTGCTTCTACGCAATCCTTAGACCGATTTTCTCAGAATGGTGTTGTTGATTTGAAAGAAAGGAATTACTTGGGATTGTCAGATTGTTCATCAGTGGACAGTTGTGATTCATCTCTCCCAAGCTTGTGTGGTGAGAAAAAGGGGAATTTGAATTTGAAGGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCTCAATCACCGGAAAGAGATTTGGAATTTTACTCACCAAAGCTTGATGAGAAACCATTGTTCCCTTTGCTTCCGGCAAAAGATGGAATGCAAAAAACTGTTGTTTCGGGTAACAAGAGAGGGTTTGCTGATACCGTGGATGGGTTTTCTCAGGGGAAGTTTAATGTTAATACAGGGATTAACGTGATGCTATCGCCTAGACCTGTTGGAGCACAGCCTAACACAGTGAAAGAAATACCAAGTAAGGTGTTGCAGGAAAGGCCTTGTGCTGCTAGAGGAACTGGACTTAATCATGCCGGTGCTGCATCTATCGGTGCACAGGCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACTGCTTCCAAGAACAACAACGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTCAGTATGGATGGTGCTCCCTATCTTAGGAAGGTGGATCTAAGAACTTATTCAGCATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTTTGCATGGTTCAGAATATGTTCTCACCTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCACTGATACTTGCAGAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCTAAAAGCAGGAGTTAG 1059 0.4542 MSPAVVVMEEEGRSKLSSTVVSASTQSLDRFSQNGVVDLKERNYLGLSDCSSVDSCDSSLPSLCGEKKGNLNLKATELRLGLPGSQSPERDLEFYSPKLDEKPLFPLLPAKDGMQKTVVSGNKRGFADTVDGFSQGKFNVNTGINVMLSPRPVGAQPNTVKEIPSKVLQERPCAARGTGLNHAGAASIGAQAPASKAQVVGWPPIRSFRKNSMATASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYSAYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCRRLKIMKGSDAIGLAPRAMEKSKSRS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02354 352 SUPERFAMILY CAD & PB1 domains 230 333 - -
Vivi2g02354 352 Gene3D - 229 346 - -
Vivi2g02354 352 ProSiteProfiles PB1 domain profile. 232 336 IPR000270 GO:0005515
Vivi2g02354 352 Pfam AUX/IAA family 76 343 IPR033389 -
Vivi2g02354 352 FunFam Auxin-responsive protein 227 344 - -
Vivi2g02354 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 71 339 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02354 Vivi-Chr2 108626063 108630272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02354 246 332 B3 DNA Binding Superfamily AT1G19220 33.333 7.13e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vivi2g02354 AUX_IAA 6.4e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02354 K14484 - gmx:547502 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02354 2 108626063 108630272 Vivi2g02354 2 108626063 108630272 ECH