Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02353 ATGTCTCCGGCTGTGGTTGTTATGGAGGAGGAAGGGCGGAGCAAACTGTCGTCGACGGTGGTTTCTGCTTCTACGCAATCCTTAGACCGATTTTCTCAGAATGGTGTTGTTGATTTGAAAGAAAGGAATTACTTGGGATTGTCAGATTGTTCATCAGTGGACAGTTGTGATTCATCTCTCCCAAGCTTGTGTGGTGAGAAAAAGGGGAATTTGAATTTGAAGGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCTCAATCACCGGAAAGAGATTTGGAATTTTACTCACCAAAGCTTGATGAGAAACCATTGTTCCCTTTGCTTCCGGCAAAAGATGGAATGCAAAAAACTGTTGTTTCGGGTAACAAGAGAGGGTTTGCTGATACCGTGGATGGGTTTTCTCAGGGGAAGTTTAATGTTAATACAGGGATTAACGTGATGCTATCGCCTAGACCTGTTGGAGCACAGCCTAACACAGTGAAAGAAATACCAAGTAAGGTGTTGCAGGAAAGGCCTTGTGCTGCTAGAGGAACTGGACTTAATCATGCCGGTGCTGCATCTATCGGTGCACAGGCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACTGCTTCCAAGAACAACAACGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTCAGTATGGATGGTGCTCCCTATCTTAGGAAGGTGGATCTAAGAACTTATTCAGCATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTTTGCATGGTTCAGAATATGTTCTCACCTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCACTGATACTTGCAGAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCTAAAAGCAGGAGTTAG 1059 0.4542 MSPAVVVMEEEGRSKLSSTVVSASTQSLDRFSQNGVVDLKERNYLGLSDCSSVDSCDSSLPSLCGEKKGNLNLKATELRLGLPGSQSPERDLEFYSPKLDEKPLFPLLPAKDGMQKTVVSGNKRGFADTVDGFSQGKFNVNTGINVMLSPRPVGAQPNTVKEIPSKVLQERPCAARGTGLNHAGAASIGAQAPASKAQVVGWPPIRSFRKNSMATASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYSAYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCRRLKIMKGSDAIGLAPRAMEKSKSRS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02353 352 SUPERFAMILY CAD & PB1 domains 230 333 - -
Vivi2g02353 352 Gene3D - 229 346 - -
Vivi2g02353 352 ProSiteProfiles PB1 domain profile. 232 336 IPR000270 GO:0005515
Vivi2g02353 352 Pfam AUX/IAA family 76 343 IPR033389 -
Vivi2g02353 352 FunFam Auxin-responsive protein 227 344 - -
Vivi2g02353 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 71 339 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02353 Vivi-Chr2 108625762 108630272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02353 246 332 B3 DNA Binding Superfamily AT1G19220 33.333 7.13e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi2g02353 AUX_IAA 6.4e-90 CL0072