Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02347 ATGGTCCAAAACAGAACTCTCTATTTAAACAAACTTGAAACCCCTCTTACTTTCTTCTCCTTCATCTCACTGTACTCTTCTGTTTTTCTTTACTTTACTCATTGCTCTCAAAAGAGAGAAAAAAAAATGGAGCTTTCTCAACTTGGTTTCCTTGAGGAACTACTAGCTCCAAGAAAAGATACATGGACCACTTTATCCACCGGTTTAAACGACCTACTTCTTCCAAACGGTTGGAACTTCGACTCATTTGATGAAAATCTTCTCCTAAATCCATCTCTAAACCCTTCATTTGCTTCATTCTCAACTCCACTAGACCATAGATTTGAATGCTCTTATGGAACTGATGCTGTTTCATACCCTTTTGTTGATGGGTTCACTGTTCCAGAGCTTGATGATGCAACTCCACTTTTGCAACAAGAGGGTGTTGAAGTTGAAGAGTTTGGTTTTGTTGGAAGTGAGGAGAAGGGTTTGGAAGAGAGGAAAATTAGCTGTAAAGTTGAGGAACAAGTGAGTGAGATTCCTGTTTTTAACATGGGTTTGTGTAGTGGTGGTAATGGTCAGAAGAAAGGTAAATCGAAGAGGGTTGAAGGACAACCTTCGAAGAATCTCATGGCGGAAAGAAGGAGAAGAAAGAGGTTGAATGATAGGCTTTCCATGCTTAGGTCAATTGTCCCTAAGATCAGTAAGATGGACAGGACATCGATTCTCGGAGATACAATTGATTACATGAAAGAGCTTCTCGAAAGGATTGGTAAGTTGCAAGAAGAGATGGATGAAGGAACGGATCAGATAAATGTTTTGGGAATTTCTAAGGAGTTAAAGCCGAATGAAGTCATGGTAAGAAATTCCCCTAAGTTTAATGTTGAGAGGAGAGATCAAGACACAAGGATAAGCATATGCTGTGCCACAAAGCCGGGCTTATTGCTGTCAACAGTGAACACATTGGAAGCATTAGGCCTCGAGATTCACCAATGTGTTATAAGCAGTTTCAATGATTTTTCACTGCAAGCATCTTGCTCAGAGGTGGCTGGACAGAGAAATTGTATGAACCCTGAAGAGATAAAACAGTCACTATTCAGGAACGCAGGTTATGGTGGGAGGTGTCTTTAG 1110 0.4045 MVQNRTLYLNKLETPLTFFSFISLYSSVFLYFTHCSQKREKKMELSQLGFLEELLAPRKDTWTTLSTGLNDLLLPNGWNFDSFDENLLLNPSLNPSFASFSTPLDHRFECSYGTDAVSYPFVDGFTVPELDDATPLLQQEGVEVEEFGFVGSEEKGLEERKISCKVEEQVSEIPVFNMGLCSGGNGQKKGKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMDEGTDQINVLGISKELKPNEVMVRNSPKFNVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVAGQRNCMNPEEIKQSLFRNAGYGGRCL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02347 369 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 158 363 - -
Vivi2g02347 369 CDD ACT_UUR-ACR-like 295 336 - -
Vivi2g02347 369 Pfam Helix-loop-helix DNA-binding domain 203 246 IPR011598 GO:0046983
Vivi2g02347 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 265 IPR036638 GO:0046983
Vivi2g02347 369 SMART finulus 203 252 IPR011598 GO:0046983
Vivi2g02347 369 Gene3D - 188 263 IPR036638 GO:0046983
Vivi2g02347 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Vivi2g02347 369 Coils Coil 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02347 Vivi-Chr2 108233545 108235475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02347 71 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 49.518 1.35e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g02347 HLH 8.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02347 - - vvo:131646593 702.205