Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02346 ATGGTCCAAAACAGAACTCTCTATTTAAACAAACTTGAAACCCCTCTTACTTTCTTCTCCTTCATCTCACTGTACTCTTCTGTTTTTCTTTACTTTACTCATTGCTCTCAAAAGAGAGAAAAAAAAATGGAGCTTTCTCAACTTGGTTTCCTTGAGGAACTACTAGCTCCAAGAAAAGATACATGGACCACTTTATCCACCGGTTTAAACGACCTACTTCTTCCAAACGGTTGGAACTTCGACTCATTTGATGAAAATCTTCTCCTAAATCCATCTCTAAACCCTTCATTTGCTTCATTCTCAACTCCACTAGACCATAGATTTGAATGCTCTTATGGAACTGATGCTGTTTCATACCCTTTTGTTGATGGGTTCACTGTTCCAGAGCTTGATGATGCAACTCCACTTTTGCAACAAGAGGGTGTTGAAGTTGAAGAGTTTGGTTTTGTTGGAAGTGAGGAGAAGGGTTTGGAAGAGAGGAAAATTAGCTGTAAAGTTGAGGAACAAGTGAGTGAGATTCCTGTTTTTAACATGGGTTTGTGTAGTGGTGGTAATGGTCAGAAGAAAGGTAAATCGAAGAGGGTTGAAGGACAACCTTCGAAGAATCTCATGGCGGAAAGAAGGAGAAGAAAGAGGTTGAATGATAGGCTTTCCATGCTTAGGTCAATTGTCCCTAAGATCAGTAAGATGGACAGGACATCGATTCTCGGAGATACAATTGATTACATGAAAGAGCTTCTCGAAAGGATTGGTAAGTTGCAAGAAGAGATGGATGAAGGAACGGATCAGATAAATGTTTTGGGAATTTCTAAGGAGTTAAAGCCGAATGAAGTCATGTTTAATGTTGAGAGGAGAGATCAAGACACAAGGATAAGCATATGCTGTGCCACAAAGCCGGGCTTATTGCTGTCAACAGTGAACACATTGGAAGCATTAGGCCTCGAGATTCACCAATGTGTTATAAGCAGTTTCAATGATTTTTCACTGCAAGCATCTTGCTCAGAGGTGGCTGGACAGAGAAATTGTATGAACCCTGAAGAGATAAAACAGTCACTATTCAGGAACGCAGGTTATGGTGGGAGGTGTCTTTAG 1092 0.4048 MVQNRTLYLNKLETPLTFFSFISLYSSVFLYFTHCSQKREKKMELSQLGFLEELLAPRKDTWTTLSTGLNDLLLPNGWNFDSFDENLLLNPSLNPSFASFSTPLDHRFECSYGTDAVSYPFVDGFTVPELDDATPLLQQEGVEVEEFGFVGSEEKGLEERKISCKVEEQVSEIPVFNMGLCSGGNGQKKGKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMDEGTDQINVLGISKELKPNEVMFNVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVAGQRNCMNPEEIKQSLFRNAGYGGRCL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02346 363 CDD ACT_UUR-ACR-like 289 330 - -
Vivi2g02346 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 265 IPR036638 GO:0046983
Vivi2g02346 363 SMART finulus 203 252 IPR011598 GO:0046983
Vivi2g02346 363 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 158 357 - -
Vivi2g02346 363 Gene3D - 188 263 IPR036638 GO:0046983
Vivi2g02346 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Vivi2g02346 363 Coils Coil 243 263 - -
Vivi2g02346 363 Pfam Helix-loop-helix DNA-binding domain 203 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02346 Vivi-Chr2 108233544 108235475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02346 71 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 47.697 2.22e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g02346 HLH 8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02346 - - vvo:131646593 683.715