Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02321 ATGGAATCTTGGAGTGGCATCCCTGAAGAGAGAAGCTATTTGTTTTGTGATGAAATGGACTTTTCATTTGATGCTTTTATGAGAAGTCGAAAACCATCAGTTGAATTGGAGAACAAATCTTCAGGTAACTTTGAAAGAGATGGATTTAAAAGTATGGAGTTTGTGGAGTTGGGATTTCCCGACTTTTTGCAGAAGTCTTTTCATGGTAGCAAGCCTATGAAGACATCTGGGGCTGTTCATGGTTCGGTTCAGACATCAAGTTGTGAGCTAGAGAGTAATAATTCTAGTAAAAGAGGGGATTCCTCTATCCGTGTTATTGCTTTTGATTCGTTTTTTAAGGAAGAAGATTATGAGTCTAAGAATTTAAAATCTCTATTTGAATCGAAAAATCATGATTCCACACCGATACATCAAACCGTGCTTTCAAAGAGAGCTCGCACTACCTCTTTACCTTCCCAGGCTCTTATTTGCCAAGTTTATAATTGTAATATGGATCTTAGCACCTCGAAAGATTACCACAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTTGTTGTCAATGGTGTTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGGTAGCTGAGTTCGATGATGGTAAGCGCAGTTGTCGTAGGCGTTTAGCTGGACACAATGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTTCAATCTTATCAAGGTACTAACAACTTTTCCTTTCAAGACATATTTCAAAGTGGAATCCTTTTCTCAGCAAAGCATGATCAAATCTCTCAAAGTGGACATATCAAACTAGAAGAGGAACCAATTTGCAGCCCTCAACTAGACACGCACTCCACACTTGATCACGAGTTATCTAGTCGTGCTCTCTCTCTTCTGTCATCTCAGTCACAGAATCCATCACGCCATGCAGCAGGAAATACATTAGCTACCTCCCTTCTTTTTCACGGCATCCACGAGCAAGACAGTGATGACCAGGATTCGAAAAATGAATTGTTACCACGTGAGATAAACTCTAAGGGAGTTATCAAATCTGAAAATGGAGTTACTGTTGATTTGTTTCAGCTGTCTTCTCATCTTCAAAGAGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAGGATTTTTGTTTCCCAACTGTGTGA 1200 0.3967 MESWSGIPEERSYLFCDEMDFSFDAFMRSRKPSVELENKSSGNFERDGFKSMEFVELGFPDFLQKSFHGSKPMKTSGAVHGSVQTSSCELESNNSSKRGDSSIRVIAFDSFFKEEDYESKNLKSLFESKNHDSTPIHQTVLSKRARTTSLPSQALICQVYNCNMDLSTSKDYHKRHKVCDVHSKTAKVVVNGVEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTNNFSFQDIFQSGILFSAKHDQISQSGHIKLEEEPICSPQLDTHSTLDHELSSRALSLLSSQSQNPSRHAAGNTLATSLLFHGIHEQDSDDQDSKNELLPREINSKGVIKSENGVTVDLFQLSSHLQRVEQQRNSVLVKWENEDFCFPTV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02321 399 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 320 IPR044817 GO:0003677
Vivi2g02321 399 MobiDBLite consensus disorder prediction 77 98 - -
Vivi2g02321 399 MobiDBLite consensus disorder prediction 73 98 - -
Vivi2g02321 399 Pfam SBP domain 157 230 IPR004333 GO:0003677
Vivi2g02321 399 FunFam Squamosa promoter-binding-like protein 14 148 218 - -
Vivi2g02321 399 Gene3D - 149 218 IPR036893 GO:0003677|GO:0005634
Vivi2g02321 399 SUPERFAMILY SBT domain 156 236 IPR036893 GO:0003677|GO:0005634
Vivi2g02321 399 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02321 Vivi-Chr2 106988401 106991819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02321 142 397 SBP-box Gene Family AT1G69170 42.712 3.59e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi2g02321 SBP 8.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02321 - - psat:127119704 661.759