Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02304 ATGCAAATGTTTTCATTCTTTTCAATGCTTAACTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTTCATTCATATTCATATTCCTTTCTGTCATTATCCTCCTCCAAGTCCAACTCCAAACCACTTTCTCTTTCTCTTCTAGTCCTAATAATCCTAACCATGAAGTCACTACTCTCTTCACATGGCTTCATTCTTCATCTCCACAGCCACCACCTCCATACTTCTCTGACTGGAACATCCTTGACACAAATCCATGCAACTGGACCTCCATAACATGTTCTCCACTTTCCTTTGTCACTGAGATTAATATTCAGTCCATCACTCTTCAGCTTCCTGTACCTTCAAACCTCTCTTCATTTCAGTTTCTGAATAAACTTGTCATTTCTGATTCCAATCTCACAGGAACTCTTCCTTTGGACATTGGTGATTCATCTTCACTCACTGTTATTGATCTTAGCTTTAACAATCTCGTTGGTTCGATTCCTTCGAGTATCGGAAAGTTGCATAGTCTAGTGAATTTGTCTTTGAATTCTAATCAGCTTACTGGTAGAATCCCAGATGAGATAAGTAACTGCATTAGTCTGAAAACTCTACATCTTTTCGATAATCAGTTAGGTGGAAGTATACCGAATTCGATAGGAAAATTGTCGAAACTTGAAGTTCTTAGAGCAGGTGGAAACAAAGATATAACTGGGAAGATTCCAGAAGAGATTGGAGAATGTAGTAATTTGACAGTTTTAGGCCTTGCTGATACAAGAATATCAGGTTCTTTACCTGTTTCTTTTGGTAAGCTTAAAAGGCTTCAAACTTTGTCAATTTATACAACTATGGTTTCTGGTGAAATTCCTAAAGAGATAGGTGATTGTTCTGAGCTTGTTGATTTGTTTCTGTATGAAAATAGCTTATCAGGTTCTATTCCTTCAGAGATTGGTAAGCTGAAGAAGCTTGAACAGTTGTTTCTATGGCAGAATGGACTTGTTGGTGCTATTCCTAATGAGATTGGTAATTGTTCAAGTTTGAGAAACATTGATCTATCTTTGAATTCTTTATCTGGAACTATACCTTTGTCTTTAGGGGATCTTTTAGAGCTTCAAGAGTTTATGATAAGTGATAATAATGTATCTGGTTCAATTCCTGCAACACTTTCAAATGCAATAAAGCTTCAACAGTTGCAAGTTGATACTAATCAGCTCTCGGGTTTGATTCCGCCGGAGATTGGGAAATTGTCGAATCTTTTAGTGTTTTTCGCTTGGCAGAATCAGCTTGAAGGAAGCATTCCTTCGAGTTTGGGAAACTGTAGTAACTTGCAAGCGCTTGATTTGTCGAGAAATTCGCTTACTGGTGGTATTCCTTCTGGACTATTTCAGCTTCAGAATTTAACAAAACTGCTTCTGATTTCCAATGACATATCAGGTTCTATACCATCGGAAATCGGTAGTTGTAAGTCTCTTATAAGGTTAAGGCTTGGAAGCAATAGGATTACTGGAAGCATTCCTAAGACAATTGGAAGTCTCAAGAGTTTGAACTTTTTAGATTTTTCTGGTAACCGTCTTTCGGGTCCGGTTCCTGATGAAATAAGAAGCTGCACTGAATTGCAGATGATAGACTTCAGTGCTAACAACTTAGAAGGCTCGCTTCCGAATTCGTTGTCGTCGCTATCTTCACTTCAGGTATTGGATGCTTCTTTTAACAAGTTTTCGGGTCCGTTGCCAGCGAGCTTAGGTCGCCTTGTTTCGTTAAGTAAGTTAATCCTAGGAAATAACTTGTTTTCGGGACCGATTCCTGCATCACTAAGCCTATGCTCAAGTCTCCAACTTCTTGATCTTAGTAGCAATCAGCTCACTGGAAGCATACCAGCTGAATTAGGCCAAATCGAAGCGCTGGAAATCGCTCTCAATCTTAGTTGCAATTTATTAAGTGGAACGATACCGCCTCGAATATCTTCTCTTAACAAGCTTTCCATATTAGACCTTTCATATAACCAGTTGGAAGGAGATTTGCAGACTCTCTCAGAGCTTGATAACCTTGTCTGCCTCAATGTTTCTTACAACAAATTTTCGGGCTATCTTCCCGATAACAAGCTTTTCAGACAGTTAACGACGAAAGACATCACTGGAAATCAAGGACTTTGCACTTCAGGTCAGGACTCATGCTTTGTAAAGGATTCTAGCAAAACCGATATGGCGTTGAATGAGAATGAGGTAAGGAAATCGCGTAGGATTAAGCTAACCATTGGGTTGCTGATAGCGTTGACAGTATTAATGATATTTATGGGGATAACTGCTGTGATCAAAGCAAGGAGAACCATTCGAGACGATGATTCGGAGTTAGGAGACTCGTGGCCATGGCAATTCATACCATTCCAGAAGCTAAAATTTTCAGTGGAGCAAGTACTGAGATGTTTGATTGATAGGAATATAATCGGTAAGGGATGTTCAGGTGTTGTTTATCGCGGTGAAATGGATAACGGCCAAGTCATTGCTGTGAAGAAACTTTGGCCTATAACAACCGATGAAGGAGAGGCATTGAAGGATTTCAAAAGTGGAGTTCGAGATTCGTTCTCAGCTGAGGTTAAGACGCTCGGCTCAATCCGTCATAAGAACATTGTGAGGTTCTTAGGTTGTTGTTGGAACAAGAAAACAAGATTGCTTATTTTTGATTATATGCCAAATGGAAGTTTAAGCAGTGTACTTCATGAGAGAACTGGAAATTCTCTTGATTGGGAACTTAGGTTCCGAATTCTGTTAGGTTCTGCAGAAGGACTTGCATATCTACACCATGACTGTGTTCCGCCTATAGTACACAGAGATATTAAAGCCAATAACATCTTAATTGGACTTGAATTCGAACCTTATATAGCCGACTTTGGCTTGGCCAAGCTTGTCGATGATGGAGATATCGGTCGTTCCTCCAATACAGTGGCCGGTTCATATGGATACATTGCTCCAGAATACGGATATATGTTGAAGATCACAGAAAAGAGCGATGTTTATAGCTACGGTGTAGTTTTGCTAGAAGTCTTGACTGGCAAGCAACCGATCGATCCAACAATACCAGACGGATTACACATTGTTGATTGGGTGAGACAAAAAAGAGGACTTGAAGTGCTTGATCCTAGCTTACTCTCGCGACCAGAATCCGAAATAGAAGAAATGATACAGGCATTGGGAATAGCCTTATTGTGTGTAAATCCATCTCCTGATGAAAGACCAACAATGAGAGATATAGCTGCAATGTTGAAGGAAATAAAGCATGAAAGAGAGGAATATGCGAAATTCGACGCGCTTTTAAAAGGGTCTCCTGCAAATGATTCAAAAGTTGCTGCAGCATCTTCATCAGCATCAATCATGCAAAGTTTGAATACAAAAAGCAATAATACAAGCTTCTCAGTGACTTCATTGCTTCATTCATCTTCAAGTTCTAAGCTGGGTTTCAAAAAGATGCCTCTGGGGCTAATTTTAGGAATAGGAAGGGCATTTCGAAGGAAGCGTACATCGTCGCTCGATATTCTATCGCCGAAACGAGCTCCCCGGGGTTTTTACAAGGGAAAGAACTGCCAGCCCACTGGTTTCCACACTCGCAAAGGTGGGTATGTGGTGTTGCCGGAAAAGTTACCAAACTATGTAGTTCCTGATTTGACTGATTTTAAGCTCAAGCCATATGTATCCCAGTGTCCCATAGAAGCGAACTCTGCCGAGGCTTCTCAAACGGCTAAATAA 3717 0.4019 MQMFSFFSMLNSSSSSSSSSSSFIFIFLSVIILLQVQLQTTFSFSSSPNNPNHEVTTLFTWLHSSSPQPPPPYFSDWNILDTNPCNWTSITCSPLSFVTEINIQSITLQLPVPSNLSSFQFLNKLVISDSNLTGTLPLDIGDSSSLTVIDLSFNNLVGSIPSSIGKLHSLVNLSLNSNQLTGRIPDEISNCISLKTLHLFDNQLGGSIPNSIGKLSKLEVLRAGGNKDITGKIPEEIGECSNLTVLGLADTRISGSLPVSFGKLKRLQTLSIYTTMVSGEIPKEIGDCSELVDLFLYENSLSGSIPSEIGKLKKLEQLFLWQNGLVGAIPNEIGNCSSLRNIDLSLNSLSGTIPLSLGDLLELQEFMISDNNVSGSIPATLSNAIKLQQLQVDTNQLSGLIPPEIGKLSNLLVFFAWQNQLEGSIPSSLGNCSNLQALDLSRNSLTGGIPSGLFQLQNLTKLLLISNDISGSIPSEIGSCKSLIRLRLGSNRITGSIPKTIGSLKSLNFLDFSGNRLSGPVPDEIRSCTELQMIDFSANNLEGSLPNSLSSLSSLQVLDASFNKFSGPLPASLGRLVSLSKLILGNNLFSGPIPASLSLCSSLQLLDLSSNQLTGSIPAELGQIEALEIALNLSCNLLSGTIPPRISSLNKLSILDLSYNQLEGDLQTLSELDNLVCLNVSYNKFSGYLPDNKLFRQLTTKDITGNQGLCTSGQDSCFVKDSSKTDMALNENEVRKSRRIKLTIGLLIALTVLMIFMGITAVIKARRTIRDDDSELGDSWPWQFIPFQKLKFSVEQVLRCLIDRNIIGKGCSGVVYRGEMDNGQVIAVKKLWPITTDEGEALKDFKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSVLHERTGNSLDWELRFRILLGSAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDIGRSSNTVAGSYGYIAPEYGYMLKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHIVDWVRQKRGLEVLDPSLLSRPESEIEEMIQALGIALLCVNPSPDERPTMRDIAAMLKEIKHEREEYAKFDALLKGSPANDSKVAAASSSASIMQSLNTKSNNTSFSVTSLLHSSSSSKLGFKKMPLGLILGIGRAFRRKRTSSLDILSPKRAPRGFYKGKNCQPTGFHTRKGGYVVLPEKLPNYVVPDLTDFKLKPYVSQCPIEANSAEASQTAK 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02304 1238 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 888 1097 - -
Vivi2g02304 1238 Pfam Protein tyrosine and serine/threonine kinase 805 1078 IPR001245 GO:0004672|GO:0006468
Vivi2g02304 1238 Gene3D Ribonuclease Inhibitor 449 543 IPR032675 -
Vivi2g02304 1238 Gene3D Ribonuclease Inhibitor 352 448 IPR032675 -
Vivi2g02304 1238 SUPERFAMILY L domain-like 69 421 - -
Vivi2g02304 1238 SUPERFAMILY RNI-like 369 707 - -
Vivi2g02304 1238 PRINTS Leucine-rich repeat signature 603 616 - -
Vivi2g02304 1238 PRINTS Leucine-rich repeat signature 649 662 - -
Vivi2g02304 1238 ProSiteProfiles Protein kinase domain profile. 801 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g02304 1238 Pfam Leucine rich repeat N-terminal domain 52 93 IPR013210 -
Vivi2g02304 1238 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 308 1081 - -
Vivi2g02304 1238 SUPERFAMILY Protein kinase-like (PK-like) 779 1080 IPR011009 -
Vivi2g02304 1238 ProSitePatterns Protein kinases ATP-binding region signature. 807 830 IPR017441 GO:0005524
Vivi2g02304 1238 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 451 545 - -
Vivi2g02304 1238 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 227 450 - -
Vivi2g02304 1238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Vivi2g02304 1238 Gene3D Transferase(Phosphotransferase) domain 1 888 1098 - -
Vivi2g02304 1238 FunFam Nuclear pore complex protein NUP107 51 208 - -
Vivi2g02304 1238 Gene3D Ribonuclease Inhibitor 170 254 IPR032675 -
Vivi2g02304 1238 Gene3D Ribonuclease Inhibitor 255 351 IPR032675 -
Vivi2g02304 1238 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 784 887 - -
Vivi2g02304 1238 SMART LRR_sd22_2 649 674 - -
Vivi2g02304 1238 SMART LRR_sd22_2 167 190 - -
Vivi2g02304 1238 SMART LRR_sd22_2 312 344 - -
Vivi2g02304 1238 SMART LRR_sd22_2 528 554 - -
Vivi2g02304 1238 Pfam Mitochondrial ribosomal protein L27 1170 1223 IPR019189 GO:0003735|GO:0005762
Vivi2g02304 1238 Gene3D Phosphorylase Kinase; domain 1 786 887 - -
Vivi2g02304 1238 SMART serkin_6 801 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g02304 1238 FunFam Putative LRR receptor-like serine/threonine-protein kinase 630 715 - -
Vivi2g02304 1238 Gene3D Ribonuclease Inhibitor 630 717 IPR032675 -
Vivi2g02304 1238 Gene3D Ribonuclease Inhibitor 544 629 IPR032675 -
Vivi2g02304 1238 Gene3D Ribonuclease Inhibitor 54 169 IPR032675 -
Vivi2g02304 1238 FunFam LRR receptor-like serine/threonine-protein kinase 550 625 - -
Vivi2g02304 1238 ProSiteProfiles Leucine-rich repeat profile. 651 673 IPR001611 GO:0005515
Vivi2g02304 1238 SMART LRR_typ_2 312 336 IPR003591 -
Vivi2g02304 1238 SMART LRR_typ_2 552 576 IPR003591 -
Vivi2g02304 1238 SMART LRR_typ_2 504 528 IPR003591 -
Vivi2g02304 1238 SMART LRR_typ_2 600 624 IPR003591 -
Vivi2g02304 1238 SMART LRR_typ_2 649 672 IPR003591 -
Vivi2g02304 1238 SMART LRR_typ_2 167 191 IPR003591 -
Vivi2g02304 1238 SMART LRR_typ_2 432 456 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02304 Vivi-Chr2 106517048 106525792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02304 74 1098 Receptor kinase-like Gene Family AT5G56040 49.327 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi2g02304 PK_Tyr_Ser-Thr 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02304 - - vvo:131649742 2273.82