Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02195 ATGGAAGAGAAGAAGTTTGAGTGTAGGTATTGTTTGCGAAAGTTTCTTTGTGGTAAGTCTCTTGGTGGTCACATAAGGACTCATATGATGAGTGAGAATGAAGAGAGAAGAATAATGAATGCTAATGCTGCTGCTGCTAACACTGTGTTTAAGTTTGATGATGGAAGAAAGAGAAAGAGATCTGAATTAGGGTCTAGTAGTGTTGGTGGTGACGATGGAAACTACATTTATGGTCTTAGAGAGAATCCCAAGAAAACAACTAGGTTTGTGCATTCCAATGCTGCTGCTGCTACTACTGTTCAGAATGAAAGATTCTGCAAAGATTGTGGAAAAGGTTTTTTCTCGTTGAAAGCTTTGTGCGGGCACATGGCTTCTCATTCTGAGAAAGGTGTCGTGTCTGGTGTCGGTGTAAGGGATAGTCAGTCGGATACCGAGGATTCGGTTCCGACTGATACCAGGAAGTCAAAGAGAATGAAGCTCAAGATTATTAGTAATGAGAATCGGCCGTCTTCGTCTTCGCCTCCGTGGGGAAACTGTTCTTCTTCGATTTCGGAGGTTGATCAAGATCATGAAGAAGTTGCCAGGACTTTGATGATGTTGTCTAGAGATTATTCTTTCAAGGGTAGGTTTGCTTTGAGGACAGACTCTTCTGAGAACAACTCTGCTGTTGTTGAGCCCGAAGCGAAATTGAAATTGAAATCGAAAATGGTTGATACTAAGGTTGTTGGAACTGGGATGATCAAGGTGAATGGTATGACGATGAAGTATTATGGAGAAGGTTATGATTCTGATAACTCTGATTCTGGTTACTTCCTGCACGGTCCTAAAAAGGTAGAAGCTGATGATGCTTCAAGCGAGTGGTGTTTAAGGAACCGATTTCAAGATCATGAATTTGAATCAAGTAAGAAGATACAGATACAAAGCAATAAGAACAACATTCGAAACGGTTATGGTAACGATGAGATGTATTCGGGTTTGAAGAATGTAAGAGAGAGTTATTCAGATGATTCGGTTTATGAGAGTGATGAAAACAGCACTGATAGTGATTCATATACTGCTCCAAAGGCACAAGCCAACAAGAGCAACATGAATGGAGCAAAGAGTGGTAATTACAAGAAGTCAAGTAGCAAAGGGAAGAAGAAAGTGAAGTCAAAGAAAAACAAAGAACATGATTGTCCACTTTGCCCCAGGACTTTCAAGTCAGGACAAGCTTTAGGAGGTCACAAAAGATCACATTTTGTTGGTGGAGGGTATGATGAGAGCACTCTTGTCATTAGACCAGGTGCTCAAGCTCTTGCTCCAGCAAGAGCTCTGGCGCCGGTGCGGGCACCGGCGCCAGCTCCTGCGGCTGTTAATGCTTGCTTGATTGATCTTAATCTACCTGCTCCTGATGATGAATAG 1401 0.4211 MEEKKFECRYCLRKFLCGKSLGGHIRTHMMSENEERRIMNANAAAANTVFKFDDGRKRKRSELGSSSVGGDDGNYIYGLRENPKKTTRFVHSNAAAATTVQNERFCKDCGKGFFSLKALCGHMASHSEKGVVSGVGVRDSQSDTEDSVPTDTRKSKRMKLKIISNENRPSSSSPPWGNCSSSISEVDQDHEEVARTLMMLSRDYSFKGRFALRTDSSENNSAVVEPEAKLKLKSKMVDTKVVGTGMIKVNGMTMKYYGEGYDSDNSDSGYFLHGPKKVEADDASSEWCLRNRFQDHEFESSKKIQIQSNKNNIRNGYGNDEMYSGLKNVRESYSDDSVYESDENSTDSDSYTAPKAQANKSNMNGAKSGNYKKSSSKGKKKVKSKKNKEHDCPLCPRTFKSGQALGGHKRSHFVGGGYDESTLVIRPGAQALAPARALAPVRAPAPAPAAVNACLIDLNLPAPDDE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02195 466 MobiDBLite consensus disorder prediction 164 184 - -
Vivi2g02195 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vivi2g02195 466 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 466 - -
Vivi2g02195 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Vivi2g02195 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 412 IPR013087 -
Vivi2g02195 466 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Vivi2g02195 466 Pfam C2H2-type zinc finger 390 412 - -
Vivi2g02195 466 Pfam C2H2-type zinc finger 6 29 - -
Vivi2g02195 466 Pfam C2H2-type zinc finger 106 128 - -
Vivi2g02195 466 MobiDBLite consensus disorder prediction 333 394 - -
Vivi2g02195 466 MobiDBLite consensus disorder prediction 344 372 - -
Vivi2g02195 466 MobiDBLite consensus disorder prediction 144 163 - -
Vivi2g02195 466 MobiDBLite consensus disorder prediction 132 185 - -
Vivi2g02195 466 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vivi2g02195 466 SMART c2h2final6 390 412 IPR013087 -
Vivi2g02195 466 SMART c2h2final6 104 126 IPR013087 -
Vivi2g02195 466 SMART c2h2final6 6 28 IPR013087 -
Vivi2g02195 466 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Vivi2g02195 466 SUPERFAMILY beta-beta-alpha zinc fingers 105 412 IPR036236 -
Vivi2g02195 466 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02195 Vivi-Chr2 101886999 101888808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02195 1 466 C2H2 Transcription Factor Family AT1G26610 36.944 9.73e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g02195 zf-C2H2_6 0.00076 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02195 - - psat:127119641 597.816