Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02109 ATGGAACAACAAACTCAACAAGACTCAACTAAAAAAACTACCTTTATTACAAATCATGAAACCAACTCTCATCAACATCATCATCATCATCATCATCAACATCATCATCACCACCATCATCATCATCATCACCATCACTTCTATCAACAACATCAACACCTATATCATCAGACTCAGTTAACTCAACTTGGTTTCTCCAACATCAACATCAACAACAACAAGTATCAAATATATCACCCTGCTCTTCTTCCTTTACCTTCTCTCCCACCTTTCCCTCAAAATCAATCCATCAAATTTAGAACCCATTTGCAGAAACTTCCATGCAAACTCAATACTTCTCCTTCATCAGACTACAATCTCTCTCAGCTTTCACTTTCTCCTTCTACAAAGGAACTTCATAAGCAAAATAAGTCAACTTTCAAAGAAGATGATGGGAAAAAGCTCATTTCAACAAGGAAGGCACAAGAAGTGATTGTTGCAAGGAGGCCTGACTCAGGTGGACAAGAAGGTCCTGTGATATCCCTCCTTGCAAACCATTTTTTGGTGAAGTTTGATTCATCACAAAAAATATATCATTACAATGTTGAAATTACTCCTCATCCCTCCAAGGATGTTGCTAGGGAGATTAAACATAAATTGGTAAATAGCAATTCGGTGATTTTGTCGGGCGCTCTTCCGGCGTATGATGGGAGGAAGAATCTTTATAGTCCAATTGAATTCCAAAATGATAAGCTTGAGTTTTACATAAGCCTTCCAATCCCTTCGAGTAAATCGTCATCGCCTTACGGAGAAATGAATGATATAAACGAGAGGCGTGAACAACATAAACTATTCCGGATAAACATCAAACTAGTCTCGAAGATTGACGGGAAAGAGTTGACTAACTACTTGAGCAGAGAAGGCGATGACGGGATTCCACTTCCACAGCATTATCTACATGCATTGGATGTGATTTTGAGGGAAAGTCCGACGGAGAAATGTATACCGGTAGGAAGGTCATTCTTTTCGAGTTCAATGGGGAGATGCAAAGATATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCGACGCAACAAGGACTTGCTCTCAATGTTGATTTCTCAGTAACCGCTTTCCATGAGAGTATAGGAGTTATTCCGTATTTGCAGAAACGTCTTGAGTTTTTCAGAGACCTTTCTCAAAGGAACGCTGCGGAGTTAACTTGTGAAGAAAGGAAGGAAGTGGAGAAAGCGTTGAAGAATATCAGAGTGTTTGTTTGTCATAGAGAAACCGTTCAGAGATATCGTGTCTATGGTTTAACCGAAGAGGCAACTGAAAATCTTTGGTTTCCTGATAGAGACGGAACGAATTTGAGGCTTATGAGTTACTTTAAAGATCACTATAACTATGATATACAGTTCAGGAAGTTACCGTGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTACCTATGGAGCTTTGTGTGATCTGCGAAGGGCAAAAGTTCCTCGGGAAACTGTCGGATGATCAGACGGCAAAAATACTCAAGATGGGCTGTCAACGACCGGGAGAACGAAAAGCCATCATCGAAGGCGTCATCAGAGGAAATGTTGGTCCTACGAGTGGTGACCAGGAAAAGGAATTCAAACTCCAAGTCTCGAGAGAAATGACGAGGTTGACCGGTAGAATTCTTTACCCTCCCAAACTAAAGCTTGGAGAAGGAGGTCAAGTGAGAAACTTGACTCCTTCACGTCATGATCGCCAATGGAACTTTCTCGACGGCCATGTTTTCGAAGGAACTACAATTGAAAGATGGGCACTAATAAGTTTCGGAGGCACGCCCGAGCAAAAATCTTTTATCCCAAGATTCATAAACCAGTTAACTCAAAGATGTGAACAATTAGGCATTTTTCTTAACAAGAACACGGTTATAAGTCCGCAGTTTGAATCAAGTCACGTTCTTAACAATGTCACACTTTTGGAATCTAAGCTCAATAGAATCCAAAGGGTTGCCTCAAACAATCTGCAGCTTCTCATTTGTATAATGGAGAAAAAACACAAAGGCTATGGAGACTTGAAACGAATCGCGGAGACTAGTGTCGGTGTTGTAAGCCAGTGCTGTCTTTATCCGAATCTTGTCAAGTTAAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTTGGTGGATGCACGGTTGCTTTGTACAACTCGCTTCCTTCTCAACTACCGCGTCTTTTTAGCATCGACGAGCCGGTGATGTTCATGGGAGCTGATGTAACACATCCTCATCCTCTTGACGATTCAAGTCCATCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCCAACAAATACATTTCTAGAATAAGATCTCAAACACATAGGCAAGAAATCATCGCCGATCTTGGCGCAATGGTTGGAGAATTGCTCGACGATTTCTATCAGGAAGTTGAAAAACTCCCCAGCCGAATAATTTTCTTCCGAGACGGTGTTAGTGAAACTCAATTCCACAAAGTTCTCGACGAGGAACTTCAATCCATAAAACAAGCATGTTCATCAAGGTTTCATGGTTACAAACCTTTTATCACTTTCGTAGTTGTGCAAAAGAGACATCACACAAGGTTGTTTCCTGATGAAACCGATCAGTCTTTGACACACAATAATTTTCATTCTCAATACGAAAATATTCCTCCGGGAACCGTGGTTGATACCGTGATCACTCATCCGAAGGAATTCGATTTTTATCTGTGTAGCCATTGGGGTGTGAAGGGAACAAGTAGGCCAACTCATTATCATGTTTTGTGGGACGAAAACGAGTTTACTTCCGATGAACTGCAGAAGCTGGTTTACAATTTGTGCTTTACTTTTGTTAGGTGTACTAAGCCAATTTCATTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGGAGACTTTACCTTGAGAGATCTGAGTCATTAGGTTTATTCAGAAGCACTTCTACATTATCAAGAGCTGCTCCTCCAAAGACACCACCTCTACCTAAACTTAGTGAAAACATCAAGAAGCTTATGTTTTACTGCTAG 3087 0.4085 MEQQTQQDSTKKTTFITNHETNSHQHHHHHHHQHHHHHHHHHHHHHFYQQHQHLYHQTQLTQLGFSNININNNKYQIYHPALLPLPSLPPFPQNQSIKFRTHLQKLPCKLNTSPSSDYNLSQLSLSPSTKELHKQNKSTFKEDDGKKLISTRKAQEVIVARRPDSGGQEGPVISLLANHFLVKFDSSQKIYHYNVEITPHPSKDVAREIKHKLVNSNSVILSGALPAYDGRKNLYSPIEFQNDKLEFYISLPIPSSKSSSPYGEMNDINERREQHKLFRINIKLVSKIDGKELTNYLSREGDDGIPLPQHYLHALDVILRESPTEKCIPVGRSFFSSSMGRCKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFFRDLSQRNAAELTCEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENLWFPDRDGTNLRLMSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIIEGVIRGNVGPTSGDQEKEFKLQVSREMTRLTGRILYPPKLKLGEGGQVRNLTPSRHDRQWNFLDGHVFEGTTIERWALISFGGTPEQKSFIPRFINQLTQRCEQLGIFLNKNTVISPQFESSHVLNNVTLLESKLNRIQRVASNNLQLLICIMEKKHKGYGDLKRIAETSVGVVSQCCLYPNLVKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFSIDEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGAMVGELLDDFYQEVEKLPSRIIFFRDGVSETQFHKVLDEELQSIKQACSSRFHGYKPFITFVVVQKRHHTRLFPDETDQSLTHNNFHSQYENIPPGTVVDTVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENEFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSTSTLSRAAPPKTPPLPKLSENIKKLMFYC 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02109 1028 Pfam Piwi domain 677 986 IPR003165 GO:0003676
Vivi2g02109 1028 Gene3D - 562 738 - -
Vivi2g02109 1028 SMART PAZ_2_a_3 388 528 IPR003100 GO:0005515
Vivi2g02109 1028 SUPERFAMILY Ribonuclease H-like 660 989 IPR012337 -
Vivi2g02109 1028 FunFam Protein argonaute 7 375 501 - -
Vivi2g02109 1028 SUPERFAMILY PAZ domain 375 533 IPR036085 GO:0005515
Vivi2g02109 1028 CDD Piwi_ago-like 545 988 IPR045246 -
Vivi2g02109 1028 CDD PAZ_argonaute_like 384 496 - -
Vivi2g02109 1028 FunFam Argonaute 10 562 738 - -
Vivi2g02109 1028 FunFam protein argonaute 10-like 746 1028 - -
Vivi2g02109 1028 Pfam Argonaute linker 1 domain 329 378 IPR014811 -
Vivi2g02109 1028 MobiDBLite consensus disorder prediction 20 54 - -
Vivi2g02109 1028 ProSiteProfiles Piwi domain profile. 676 989 IPR003165 GO:0003676
Vivi2g02109 1028 Pfam PAZ domain 392 513 IPR003100 GO:0005515
Vivi2g02109 1028 Gene3D - 748 1028 IPR036397 GO:0003676
Vivi2g02109 1028 Gene3D paz domain 374 501 - -
Vivi2g02109 1028 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 152 991 - -
Vivi2g02109 1028 ProSiteProfiles PAZ domain profile. 388 497 IPR003100 GO:0005515
Vivi2g02109 1028 SMART DUF1785_2 328 380 IPR014811 -
Vivi2g02109 1028 SMART Piwi_a_2 676 989 IPR003165 GO:0003676
Vivi2g02109 1028 MobiDBLite consensus disorder prediction 23 51 - -
Vivi2g02109 1028 Pfam N-terminal domain of argonaute 173 319 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02109 Vivi-Chr2 98146127 98150861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02109 167 1028 Eukaryotic Initiation Factors Gene Family AT1G48410 42.140 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02109 K11593 - gmx:100797755 1657.88