Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02082 ATGAGTAGGAGACCATGCTGTGAGAACATAGTAGAGTTGAAGAAAGGACCATGGACACCAAACGAAGACAAGAAGCTTATAGCATATATTACTCAAAATGGCTATGAAAACTGGCATTCTTTGCCTGCTAGAGCAGGTCTTCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGATTAACTATCTTAGTCCTTATATAAAACGAGGAAACTTTAGTTTGGAGGAAGATGACACTATTATTCAACTGCATGCTCTTCTTGGAAACAAATGGTCCACAATAGCAGCTCTCCTGCCAAGGAGAACAGACAATGAGATAAAGAATCGTTGGAATACTAACATCAAGAAAAGACTTATTAAAATGGGCATAGATCCTGTTACTCACAAACCAATATCCAACAACAAGGAAAAGGATGATATTGCTACAAAACACATGGCTCAATGGGAGAGTGTTAGATTGGAAGCTGAAGCAAGATCATCGTCAATGTTAGGTAAAACTCAAATTGAATCTTTGCCATGTTCATCAAGCTCATCAAATGTGTTAATAACCAAACACAACAATGCAGTGTATAGCAATATGTGTGCCACTATGCTTGAAAATGATGATGACCCTTTTTCTCCAACATCCATATCGAGTTTTCCTAGTAGGGACCTTGTTACTCCTACAAATGATTTGAATAATAGTAGTATTATGGAAACTAATGACCAGTGGATCATGAATGGCTATGGCTTTAACTTGCAAGATGATGATGACATAATGGTTGCATTGGAAGCATTTAGAGATGGAAATGGAAAATACAACTAG 801 0.372 MSRRPCCENIVELKKGPWTPNEDKKLIAYITQNGYENWHSLPARAGLQRCGKSCRLRWINYLSPYIKRGNFSLEEDDTIIQLHALLGNKWSTIAALLPRRTDNEIKNRWNTNIKKRLIKMGIDPVTHKPISNNKEKDDIATKHMAQWESVRLEAEARSSSMLGKTQIESLPCSSSSSNVLITKHNNAVYSNMCATMLENDDDPFSPTSISSFPSRDLVTPTNDLNNSSIMETNDQWIMNGYGFNLQDDDDIMVALEAFRDGNGKYN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02082 266 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vivi2g02082 266 FunFam MYB-related transcription factor 14 67 - -
Vivi2g02082 266 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vivi2g02082 266 Gene3D - 14 67 - -
Vivi2g02082 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi2g02082 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
Vivi2g02082 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vivi2g02082 266 FunFam MYB transcription factor 69 130 - -
Vivi2g02082 266 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi2g02082 266 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Vivi2g02082 266 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vivi2g02082 266 CDD SANT 70 113 IPR001005 -
Vivi2g02082 266 SMART sant 67 115 IPR001005 -
Vivi2g02082 266 SMART sant 14 64 IPR001005 -
Vivi2g02082 266 CDD SANT 17 62 IPR001005 -
Vivi2g02082 266 Gene3D - 69 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02082 Vivi-Chr2 97511594 97512622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02082 1 157 MYB Transcription Factor Family AT3G01140 66.258 9.82e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g02082 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02082 K09422 - gmx:100792464 268.085