Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02078 ATGATGGATAGTAGAACATGCTCTGAACTTCCACCTGGCTTCAGGTTTCATCCAACTGATGAAGAGTTAATTGTGTACTATCTTTGTAATCAAGCAACTTCACAACCTTGTCCTGCTTCTATCATCCCAGAAGTTGATATCTACAAATTCGATCCATGGCAATTACCAGATAAATCGGATTTTGGAGAAAATGAATGGTATTTTTTTAGTCCAAGAGAAAGAAAGTATCCAAATGGGGTGAGGCCTAATAGAGCAACAGTTTCAGGTTATTGGAAAGCTACTGGAACAGACAAATCAATCTTTAGTGGATCTAAGCATATTGGGGTTAAGAAAGCTTTGGTTTTTTACAAGGGTAGGCCACCAAAAGGAATCAAAACAGATTGGATTATGCATGAATATAGGTTAATTGGATCAAGAAGACAAACCAATAGACAACTTGGATCCATGAGGCTAGATGATTGGGTGTTATGTAGAATCTACAAGAAGAAGAACAGCACAAAAGCATTGGACACAAACCATGACTACTCATCAAACCAAATCAACATGACACAAAGAAAAGATGAAAATGAACAAGAATTGTTGAAATTTCCAAGGACATGTTCCCTCACTAATCTCTTGGAAATGGATTACTTGGGACCAATATCACAAATATTATCAGATGGAGCATATAATTCAACTTTTGAGTATCAAATTAATACTGCAAATGATGGAATAATTGACCCCTTTGTAAAGCCACAAATGGTTGAAATGAATACTACTACTAACAACCCTTATGGAGGTGATTCAGGGAAGTACCGTGGGAACCAAGTATGTGATTAG 819 0.3663 MMDSRTCSELPPGFRFHPTDEELIVYYLCNQATSQPCPASIIPEVDIYKFDPWQLPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKSIFSGSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLIGSRRQTNRQLGSMRLDDWVLCRIYKKKNSTKALDTNHDYSSNQINMTQRKDENEQELLKFPRTCSLTNLLEMDYLGPISQILSDGAYNSTFEYQINTANDGIIDPFVKPQMVEMNTTTNNPYGGDSGKYRGNQVCD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02078 272 SUPERFAMILY NAC domain 5 162 IPR036093 GO:0003677|GO:0006355
Vivi2g02078 272 FunFam NAC transcription factor 19 166 - -
Vivi2g02078 272 Gene3D NAC domain 19 167 IPR036093 GO:0003677|GO:0006355
Vivi2g02078 272 ProSiteProfiles NAC domain profile. 10 162 IPR003441 GO:0003677|GO:0006355
Vivi2g02078 272 PANTHER NAC TRANSCRIPTION FACTOR 56 10 183 - -
Vivi2g02078 272 Pfam No apical meristem (NAM) protein 11 135 IPR003441 GO:0003677|GO:0006355
Vivi2g02078 272 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02078 Vivi-Chr2 97284845 97286401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02078 2 217 NAC Transcription Factor Family AT1G69490 67.982 2.94e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g02078 NAM 4.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02078 - - gmx:732552 446.432