Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02034 ATGGGGAGGGTGAAACTAAAGATAAAGAGGTTGGAGAATACAAATGGTCGACAATCAACGTATGCAAAAAGGAAGAATGGAATAATGAAGAAAGCTAGTGAATTATCTATATTGTGTGATATAGATATTATACTTCTCATGTTTTCTCCTGGTGGAAAACCTTCATTATGCACAGGGAGACGCAGCAACTTTGAGGAGGTGATGGCAAAGTTTTCTCAACTAACCTCACAAGAAAGGGCAAAGAGGAAATTGGAGAGTCTTGAAGCACTAAAGAAAACGTTTAAGAAGTTAGATCATGATGTGGTTATTCAAGACTTTTATGGTACAAGTAGTCAAACTGTTGAGGATTTGAGCGATCAAGCTAAGGAATTACATAACCGAATTTCTCAGATTCAAGAGCGACTAAGACATTGGAATGACATTGAGAAAATTAGTGGTGTGGATGAATTAGGACGGATGGAAAATTCACTCAAAGAGTCTCTTAATCAAATTCATACTCAGAAGGAAAATGCACAAAAACAACAACTAGCATCACTTCAATGCAATAACCAGTTCAATGAATTGCATGTTCCCTACAAAATGAGTACTCCACAGCAATTTCAATCTCTTCCATGGATGGTTAATGGTGATAGTCAGAATATAGTACTTCCTGAAGAACCAAACTTGCTTCTCCACAAAGATGTAGAGGGCTCAACAAGCTCATCATTTGGAAGCTATGCAAGTTATCTTGGCTCAAGCACCAAACCAAACATATCCAATTCCAGTCAAGAAAATTGTGTTCTTAGTGACATGAGCAATAATGCTACAGCACCTCCTGTGAGATTGCCATTTAATGGACAGTTTTCATACATTCCAAACAATTTCAACATAATGAATGATATGAAGCTTCAACCAGCTACAACAGGGATGAATAATAATAATCCACATGAAAACCAAGTAGATAATTACCATGTCAATGGAAACTTTGAAGCACCTAAACAAGGGTTTGATCAATCTAACCACCATGGTTGGACTTCAAATTCAGGTCCTTGTGCTGTTAATCTCTTTGATGAAAATTTGTATCCACAGCCAAATTTTCCACAAGTTCATTTTGGCTTCACATAG 1104 0.3696 MGRVKLKIKRLENTNGRQSTYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRRSNFEEVMAKFSQLTSQERAKRKLESLEALKKTFKKLDHDVVIQDFYGTSSQTVEDLSDQAKELHNRISQIQERLRHWNDIEKISGVDELGRMENSLKESLNQIHTQKENAQKQQLASLQCNNQFNELHVPYKMSTPQQFQSLPWMVNGDSQNIVLPEEPNLLLHKDVEGSTSSSFGSYASYLGSSTKPNISNSSQENCVLSDMSNNATAPPVRLPFNGQFSYIPNNFNIMNDMKLQPATTGMNNNNPHENQVDNYHVNGNFEAPKQGFDQSNHHGWTSNSGPCAVNLFDENLYPQPNFPQVHFGFT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02034 367 Coils Coil 77 97 - -
Vivi2g02034 367 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Vivi2g02034 367 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Vivi2g02034 367 CDD MADS 2 54 - -
Vivi2g02034 367 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Vivi2g02034 367 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 229 - -
Vivi2g02034 367 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi2g02034 367 Coils Coil 114 141 - -
Vivi2g02034 367 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Vivi2g02034 367 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g02034 367 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi2g02034 367 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi2g02034 367 Coils Coil 154 174 - -
Vivi2g02034 367 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02034 Vivi-Chr2 95486727 95489861 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02034 1 325 Type I MADS-box Gene Family AT2G03060 47.384 4.88e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi2g02034 SRF-TF 4.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02034 - - lang:109356063 503.827