Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02027 ATGGCTACTACTACTATGATCTCTTCACAAGATAACCAGAATGCCCTTATTTACCCTTCTTCTATGCAAATGGTTTATGCTGACCTTGGATCTCTCTCTCTTGCCTCAAACAAAGAGACTTATGGTTGCAGGAGTTTTATGATGGATGATGATATGGAAGGAAAAGGCTCTTATTGTAGTGAGGAGACAAACCCTAATGAGAATAATGGAAGTGGGAAAGAGGAAGATAATGGACAGTCTAGTAAATGTGCTAGAGGACATTGGAGACCTGCTGAGGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAATCTCATTGCTGAAAAGTTAGAAGGAAGATCAGGCAAGAGTTGTAGGCTAAGATGGTTCAACCAACTGGATCCAAGAATAAACAGAAGAGCATTCAATGAAGAAGAGGAAGAAAGACTAATGCAAGCGCATCGAATTTACGGAAACAAATGGGCCATGATAGCGAGACTATTTCCAGGAAGAACAGATAATGCTGTAAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGGGAACAATCCAGTGCATACAGGAGAAGAAGATTAATGAACCAAACTAGTGTTTACAGGAGAATGGATCAAAATCCAAGCTTTGTCTGCAGGGACACCACAACAACAATGGAGACAGAACCATCACCACCTTATTTCCTCAATGGAGCCCCACTTGGGAATAATGTGTCCATTTTTCCTTATGCTGCTTCTTTCCAACATGGTGTTCATGGTGGTGGGGTTGAGTATGGTTTTAATGGTTTGCCTCACATGAGTGGTGAGAGAGAAGCTTTGCAAGGACCCCTACATGTTGGTTTCTATGCTCAACAAGCTCCTTTTGATTTCTTCTCTGGTAATAGAAGCAATGAAATGGTGGAAGAATCAATGAATCAGATAAGATATTGGGAAGGGACAAATGAAGAACATCAACAGCAAATATCAAGTTTCCACCATCATTATCCTCAACAACACCAATATCTGATGTCAATGCAGCAACAACAACAACACCAACAACAAAACAATCACAATTTCAACAGTTTGTCAAATTCCTTAGCATCATCAACACCTCACAACAACAGAGAAAACAGTGGAAAAGTTGTGATTGATGACACACATGAAGCTGTTGAAACTCCTCAATTTTTTGACTTCCTTGGAGTAGGTGCTACATGA 1206 0.4005 MATTTMISSQDNQNALIYPSSMQMVYADLGSLSLASNKETYGCRSFMMDDDMEGKGSYCSEETNPNENNGSGKEEDNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFNEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLMNQTSVYRRMDQNPSFVCRDTTTTMETEPSPPYFLNGAPLGNNVSIFPYAASFQHGVHGGGVEYGFNGLPHMSGEREALQGPLHVGFYAQQAPFDFFSGNRSNEMVEESMNQIRYWEGTNEEHQQQISSFHHHYPQQHQYLMSMQQQQQHQQQNNHNFNSLSNSLASSTPHNNRENSGKVVIDDTHEAVETPQFFDFLGVGAT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02027 401 MobiDBLite consensus disorder prediction 339 375 - -
Vivi2g02027 401 SMART sant 84 133 IPR001005 -
Vivi2g02027 401 SMART sant 136 184 IPR001005 -
Vivi2g02027 401 Gene3D - 85 136 - -
Vivi2g02027 401 ProSiteProfiles Myb-like domain profile. 132 182 IPR001005 -
Vivi2g02027 401 SUPERFAMILY Homeodomain-like 84 178 IPR009057 -
Vivi2g02027 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 131 IPR017930 -
Vivi2g02027 401 FunFam MYB transcription factor 138 209 - -
Vivi2g02027 401 CDD SANT 88 129 IPR001005 -
Vivi2g02027 401 PANTHER MYB PROTEIN-RELATED 85 346 - -
Vivi2g02027 401 MobiDBLite consensus disorder prediction 339 374 - -
Vivi2g02027 401 Gene3D - 138 209 - -
Vivi2g02027 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 186 IPR017930 -
Vivi2g02027 401 CDD SANT 139 179 IPR001005 -
Vivi2g02027 401 ProSiteProfiles Myb-like domain profile. 80 131 IPR001005 -
Vivi2g02027 401 MobiDBLite consensus disorder prediction 59 77 - -
Vivi2g02027 401 FunFam MYB transcription factor 85 136 - -
Vivi2g02027 401 Pfam Myb-like DNA-binding domain 88 148 - -
Vivi2g02027 401 MobiDBLite consensus disorder prediction 55 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02027 Vivi-Chr2 95244565 95247481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02027 19 212 MYB Transcription Factor Family AT1G69560 55.696 6.29e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g02027 Myb_DNA-bind_6 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02027 K09422 - gmx:100789305 382.104