Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02017 ATGAAGAATAATCAAAGTATGCATTTTGTTCTATCAACTGATGCAAAACCAAGACTCAAATGGACTCATGAACTTCACCAAAGATTCATTGATGCAATTAATCAACTTGGAGGTGCAGAAAAAGCAACACCAAAGAGTATTATGAGAGTGATGCAAATTCCAGGACTTACTTTGTTCCATCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACATCATCTAGAAACATGTTCTGACAACAAACAAGATTATACAGAAATTAAGAGGAGTGATGATGATTGTGGCAAGGAAATTGTGGACCAGAATCAAATCATTGAAAACATGGAGATAGCTCATGCTCTAGAAATGCAAATGGAAGTAGAGAAAAAACTTTATGAACAAATTGAGGTGCAAAAGCGTTTGCAACTTCGAATTGAAGCTCAAGGAAAGTATTTACAATCGATACTAAAGAAGGCTCAAGAAACACTTTCTGGATTCAATTCTTCTCCAATTGGTATAAAATTCACAAAAAATGAACTCTCTCAATTGGTTCAAATGATAAACAATGCTTGTCCAAGTTCTTCAATTTCAGAACTAACGGAGTCAAGAGAATTAAGTTTAGAATATGGTAAGAGGAAACAGAAAAATGGAACTATGTGTTCATTGGAAAGTTCTTTAACATCTTATGAAAGCTCGGAAAGAAAAGAAGAGAAAAATTCAATGGAAGAAATAGGAGATTTCGAAAATTTTGATACTGATTCACTTGAATTGCCACTAAGTACCGAGCGTTCAAAAGTGATATCAGTGTCGTGTCAATGTTTGCGTATGATGTCTTCGTCTGTGGTTGAGCATGATGATTCTTCTAATGAGAGAAAATGTGGCAACAAGTTGAAGAAAGCGAAGTTGTCAGAAATGCTAGACTTGAATAGCCAATTTCAGAATGACATGGACTCAAGTCACTCAACAAGTTCAAAAGCATTATTATTAGATTTAAATTGCAGTTTAAACACTTGTGAACCGTGA 1011 0.3462 MKNNQSMHFVLSTDAKPRLKWTHELHQRFIDAINQLGGAEKATPKSIMRVMQIPGLTLFHLKSHLQKYRLGKSQHHLETCSDNKQDYTEIKRSDDDCGKEIVDQNQIIENMEIAHALEMQMEVEKKLYEQIEVQKRLQLRIEAQGKYLQSILKKAQETLSGFNSSPIGIKFTKNELSQLVQMINNACPSSSISELTESRELSLEYGKRKQKNGTMCSLESSLTSYESSERKEEKNSMEEIGDFENFDTDSLELPLSTERSKVISVSCQCLRMMSSSVVEHDDSSNERKCGNKLKKAKLSEMLDLNSQFQNDMDSSHSTSSKALLLDLNCSLNTCEP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02017 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 272 IPR044848 GO:0003700
Vivi2g02017 336 Gene3D - 15 73 - -
Vivi2g02017 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Vivi2g02017 336 FunFam Myb family transcription factor 15 73 - -
Vivi2g02017 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677
Vivi2g02017 336 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Vivi2g02017 336 MobiDBLite consensus disorder prediction 214 237 - -
Vivi2g02017 336 Coils Coil 114 134 - -
Vivi2g02017 336 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Vivi2g02017 336 Pfam MYB-CC type transfactor, LHEQLE motif 111 158 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02017 Vivi-Chr2 94572226 94574232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02017 7 197 G2-like Transcription Factor Family AT1G69580 57.286 1.50e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi2g02017 Myb_DNA-binding 9.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02017 - - tpra:123905031 412.92