Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02015 ATGGCTTCCGAATCTGAAAATTCTGAGCTTTCGTATAACTTCGAAAGAATGATCAGAAACAGCGACATGTCTGTGTTATTGCCCTTCATCCAAGGTCTTTCCCACCCTTCTCCAACTCGAAGAAACAGAAACAACCCAGATCAAGAATCAGAGAGCACCGAAGATTCCGACCGTCAAAGAATCATCTTGGTGAACCCTTCGACACAGCGCATGATTATAGTGGAAGGAGTTTCAAGTCTGGAAACTCTGTTTCACGAACTGGAAAGGACCACAAAGAATAGCCAGCCACCAGCTTCAAAGGAGTCGATAGAAGGTATGAAAAGGGTTGAGATTGAAGAAAGTGATGGTGGAGAGTGTGTTGTTTGTTTGGAAGAGTTTGAGGTTGGTGGGGTTGTTAGAGAAATGCCATGTGAGCATAGGTTTCATGGTGATTGCATTGAGAAGTGGTTAGGGATTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTGTTGATGAGAAAGAGGAGGGAAAGAAAAATGAAGAAGAGGAAGAAGGAGAAGAAGGTGGAGAGAGAAGAAGGGTTGGTGGTGAAGTTTGGGTTAGTTTTTCTATTAGTAGGAGAAGGAGAAATCATGATCAAAATCAAGCTACTTCTGATGGTGATTCAAATGATTCTTCATCAAGCCCTAGAGATGGTGATGGTGATGAAATTGGGAATTGA 705 0.427 MASESENSELSYNFERMIRNSDMSVLLPFIQGLSHPSPTRRNRNNPDQESESTEDSDRQRIILVNPSTQRMIIVEGVSSLETLFHELERTTKNSQPPASKESIEGMKRVEIEESDGGECVVCLEEFEVGGVVREMPCEHRFHGDCIEKWLGIHGSCPVCRYQMPVDEKEEGKKNEEEEEGEEGGERRRVGGEVWVSFSISRRRRNHDQNQATSDGDSNDSSSSPRDGDGDEIGN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02015 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 164 - -
Vivi2g02015 234 MobiDBLite consensus disorder prediction 166 234 - -
Vivi2g02015 234 SUPERFAMILY RING/U-box 105 165 - -
Vivi2g02015 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 166 IPR013083 -
Vivi2g02015 234 SMART ring_2 119 159 IPR001841 -
Vivi2g02015 234 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Vivi2g02015 234 Pfam Ring finger domain 118 160 IPR001841 -
Vivi2g02015 234 MobiDBLite consensus disorder prediction 29 58 - -
Vivi2g02015 234 MobiDBLite consensus disorder prediction 42 58 - -
Vivi2g02015 234 FunFam E3 ubiquitin-protein ligase RNF181 86 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02015 Vivi-Chr2 94417012 94417926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02015 1 215 C3H Transcription Factor Family AT1G26800 46.222 1.54e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02015 - - vvo:131606629 233.032