Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02014 ATGGCTTCTGAAACTGAAAGTTTCGAACATTTTTCTCTGTACGACGTGATAAGAAGTGTTAGAGACATGGTTTCTGAAGCTGAAGCTTCTCAACTTTCTTATTTGTTTGAAAGAATGATAAGAACCAGAGACATGTCTCTGTTCTTTCCCTTCATGCTTCGTCTTTATGGTTTATCAATTCGACGAAACAACGATGAAGACTCAGATCAAGAAACAGAGCGTAACGAAGATTCCAATCGTCAAAGATTAATCTTGGTGAACCCATCAACACAACGTATTGTTGTAATCAACGAAGTTTCAAGTCTGGAAACTCTGCTTCATGAACTTGGAAGTACTACACATAATGGTCAACCACCAGCTTCCAAGGAGTCAATAGAAGCTATGAAAAAGGTTGAAATTGAAGAAAGTGATGATGGAGAGTGTGTTGTTTGTTTGGAACAATTTGAGATTGGTGGAGTTGTTAAAGAAATGCCTTGTAAGCATAAGTTTCATGGTAATTGTATTGAGAAGTGGTTAAGGATTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTATTAAGGAGAAAGAAGAAGAAAATTAA 585 0.3709 MASETESFEHFSLYDVIRSVRDMVSEAEASQLSYLFERMIRTRDMSLFFPFMLRLYGLSIRRNNDEDSDQETERNEDSNRQRLILVNPSTQRIVVINEVSSLETLLHELGSTTHNGQPPASKESIEAMKKVEIEESDDGECVVCLEQFEIGGVVKEMPCKHKFHGNCIEKWLRIHGSCPVCRYQMPIKEKEEEN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02014 194 SMART ring_2 141 181 IPR001841 -
Vivi2g02014 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 188 IPR013083 -
Vivi2g02014 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 72 186 - -
Vivi2g02014 194 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Vivi2g02014 194 SUPERFAMILY RING/U-box 124 188 - -
Vivi2g02014 194 FunFam E3 ubiquitin-protein ligase RNF181 109 188 - -
Vivi2g02014 194 Pfam Ring finger domain 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02014 Vivi-Chr2 94400842 94401429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02014 23 191 C3H Transcription Factor Family AT1G26800 47.159 5.69e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02014 - - vvo:131606629 363.614