Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02012 ATGGCATCTGAAACTGAAATTTTCGGACATTCTCTGTACGACTTGATAAGAAGTGTTAGAGACACGACTTCGGAAGATGAAGCTTCTCAACTTTCTTATATGTTTGAAAGAATGATCAGAACCAGAGACATGTCTCTGTTCTTTCCCTTCATGCTTCGTCTTTATGGTTTGTCAATTCCAAGAAACGATGACGAAGACTCAGATCAAGAAACAGAGCGTAATGGAGATTCTAACCGTCAAAGATTCATCTTGATGAATCCATCAACACAGCGTATTGTTGTAATCAACGAAGTTTCAAGTCTCGAAACTCTGCTTCATGAACTTGGAAGTTCTACACATAATGGTCAACCACCAGCTTCAAAAGAGTCAATACAAGGTATGAAAAAGGTTGAAATTGAAGAAAGTGATAATGGAGAGTGTGTTGTTTGTTTGGAACAATTTGAGGTTAATGGAGTTATTAAAGAAATGCCTTGTAAGCATAGGTTTCATGGTGATTGTATTGAGAAGTGGTTAAGGATTCATGGGTCTTGTCCAGTTTGTAGGTTTCAAATGCCTATTGATGAGAGAGAAGAAGGAAATTAA 582 0.3729 MASETEIFGHSLYDLIRSVRDTTSEDEASQLSYMFERMIRTRDMSLFFPFMLRLYGLSIPRNDDEDSDQETERNGDSNRQRFILMNPSTQRIVVINEVSSLETLLHELGSSTHNGQPPASKESIQGMKKVEIEESDNGECVVCLEQFEVNGVIKEMPCKHRFHGDCIEKWLRIHGSCPVCRFQMPIDEREEGN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02012 193 SUPERFAMILY RING/U-box 124 186 - -
Vivi2g02012 193 SMART ring_2 140 180 IPR001841 -
Vivi2g02012 193 MobiDBLite consensus disorder prediction 61 77 - -
Vivi2g02012 193 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Vivi2g02012 193 FunFam E3 ubiquitin-protein ligase RNF181 108 187 - -
Vivi2g02012 193 MobiDBLite consensus disorder prediction 61 81 - -
Vivi2g02012 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 64 185 - -
Vivi2g02012 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 187 IPR013083 -
Vivi2g02012 193 Pfam Ring finger domain 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02012 Vivi-Chr2 94340227 94340808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02012 28 192 C3H Transcription Factor Family AT1G26800 47.647 5.15e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02012 - - vvo:131606629 348.206