Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g02011 | ATGGCATCTGAAACTGAAATTTTCGGACATTCTCTGTACGACTTGATAAGAAGTGTTAGAGACACGACTTCGGAAGATGAAGCTTCTCAACTTTCTTATATGTTTGAAAGAATGATCAGAACCAGAGACATGTCTCTGTTCTTTCCCTTCATGCTTCGTCTTTATGGTTTGTCAATTCCAAGAAACGATGACGAAGACTCAGATCAAGAAACAGAGCGTAACGGAGATTCTAACCGTCAAAGATTCATCTTGATGAATCCATCAACACAGCGTATTGTTGTAATCAACGAAGTTTCAAGTCTCGAAACTCTGCTTCATGAACTTGGAAGTACTACACATAATGGTCAACCGCCAGCTTCAAAGGAGTCAATACAAGGTATGAAAAGGGTTGAAATTGAAGAAAGTGATGATGGAGAGTGTGTTGTTTGTTTGGAAGAGTTTGAGGTTGGTGGAGTTGTTAAAGAAATGCCTTGTAAGCACAAGTTTCATGGTAATTGTATTGAGAAGTGGTTAAGAATTCATGGGTCTTGTCCTGTTTGTAGGTTTCAAATGCCTAATGATTCATTTCTAACTTGA | 576 | 0.3837 | MASETEIFGHSLYDLIRSVRDTTSEDEASQLSYMFERMIRTRDMSLFFPFMLRLYGLSIPRNDDEDSDQETERNGDSNRQRFILMNPSTQRIVVINEVSSLETLLHELGSTTHNGQPPASKESIQGMKRVEIEESDDGECVVCLEEFEVGGVVKEMPCKHKFHGNCIEKWLRIHGSCPVCRFQMPNDSFLT | 191 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g02011 | 191 | Pfam | Ring finger domain | 139 | 181 | IPR001841 | - | |
Vivi2g02011 | 191 | SMART | ring_2 | 140 | 180 | IPR001841 | - | |
Vivi2g02011 | 191 | MobiDBLite | consensus disorder prediction | 61 | 77 | - | - | |
Vivi2g02011 | 191 | FunFam | E3 ubiquitin-protein ligase RNF181 | 108 | 187 | - | - | |
Vivi2g02011 | 191 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 64 | 185 | - | - | |
Vivi2g02011 | 191 | SUPERFAMILY | RING/U-box | 124 | 185 | - | - | |
Vivi2g02011 | 191 | MobiDBLite | consensus disorder prediction | 61 | 81 | - | - | |
Vivi2g02011 | 191 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 181 | IPR001841 | - | |
Vivi2g02011 | 191 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 187 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g02011 | Vivi-Chr2 | 94316766 | 94317341 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g02011 | 28 | 188 | C3H Transcription Factor Family | AT1G26800 | 47.590 | 3.98e-46 | 149 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g02011 | - | - | vvo:131606629 | 344.354 |