Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02011 ATGGCATCTGAAACTGAAATTTTCGGACATTCTCTGTACGACTTGATAAGAAGTGTTAGAGACACGACTTCGGAAGATGAAGCTTCTCAACTTTCTTATATGTTTGAAAGAATGATCAGAACCAGAGACATGTCTCTGTTCTTTCCCTTCATGCTTCGTCTTTATGGTTTGTCAATTCCAAGAAACGATGACGAAGACTCAGATCAAGAAACAGAGCGTAACGGAGATTCTAACCGTCAAAGATTCATCTTGATGAATCCATCAACACAGCGTATTGTTGTAATCAACGAAGTTTCAAGTCTCGAAACTCTGCTTCATGAACTTGGAAGTACTACACATAATGGTCAACCGCCAGCTTCAAAGGAGTCAATACAAGGTATGAAAAGGGTTGAAATTGAAGAAAGTGATGATGGAGAGTGTGTTGTTTGTTTGGAAGAGTTTGAGGTTGGTGGAGTTGTTAAAGAAATGCCTTGTAAGCACAAGTTTCATGGTAATTGTATTGAGAAGTGGTTAAGAATTCATGGGTCTTGTCCTGTTTGTAGGTTTCAAATGCCTAATGATTCATTTCTAACTTGA 576 0.3837 MASETEIFGHSLYDLIRSVRDTTSEDEASQLSYMFERMIRTRDMSLFFPFMLRLYGLSIPRNDDEDSDQETERNGDSNRQRFILMNPSTQRIVVINEVSSLETLLHELGSTTHNGQPPASKESIQGMKRVEIEESDDGECVVCLEEFEVGGVVKEMPCKHKFHGNCIEKWLRIHGSCPVCRFQMPNDSFLT 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02011 191 Pfam Ring finger domain 139 181 IPR001841 -
Vivi2g02011 191 SMART ring_2 140 180 IPR001841 -
Vivi2g02011 191 MobiDBLite consensus disorder prediction 61 77 - -
Vivi2g02011 191 FunFam E3 ubiquitin-protein ligase RNF181 108 187 - -
Vivi2g02011 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 64 185 - -
Vivi2g02011 191 SUPERFAMILY RING/U-box 124 185 - -
Vivi2g02011 191 MobiDBLite consensus disorder prediction 61 81 - -
Vivi2g02011 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Vivi2g02011 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02011 Vivi-Chr2 94316766 94317341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02011 28 188 C3H Transcription Factor Family AT1G26800 47.590 3.98e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02011 - - vvo:131606629 344.354