Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02009 ATGGCTTCTGAAGATGAAGCTTCTCAACTTTCCTATTTGTTTGAAAGAATGATAAGAACCAGAGACATGTCTTTGTTCTTTCCCTTCATGCTTCGTCTTTATGGTTTGTCAATTCCAAGAAACAACAACGACACGGATCAAGAAAGAAAGCGTAACGAAGATTCCAACCGTCAAAGATTCATCTTGGTGAACCCGTCAACACAACGTATTGTTGTAATCAACGAAGTTTCAAGTCTGGAAACTCTGCTTCATGAACTTGGAAGTACTACACATAATGGTCAACCGCCAGCTTCAAAGGAGTCAATAGATAGTATGAAAAGGGTTGAAATTGAAGAAAGTGATGATGGAGAGTGTGTTGTTTGTTTGGAACAATTTGAGAGTGGTGGAGTTGTTAAAGAAATGCCTTGTAAGCACAAGTTTCATGGTGATTGTATTGAGAAATGGTTAAGGATTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTATTAAGGAGAAAGAAGAAGAAAATTAA 516 0.3798 MASEDEASQLSYLFERMIRTRDMSLFFPFMLRLYGLSIPRNNNDTDQERKRNEDSNRQRFILVNPSTQRIVVINEVSSLETLLHELGSTTHNGQPPASKESIDSMKRVEIEESDDGECVVCLEQFESGGVVKEMPCKHKFHGDCIEKWLRIHGSCPVCRYQMPIKEKEEEN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02009 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 165 IPR013083 -
Vivi2g02009 171 Pfam Ring finger domain 117 159 IPR001841 -
Vivi2g02009 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 50 163 - -
Vivi2g02009 171 SUPERFAMILY RING/U-box 101 165 - -
Vivi2g02009 171 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Vivi2g02009 171 SMART ring_2 118 158 IPR001841 -
Vivi2g02009 171 FunFam E3 ubiquitin-protein ligase RNF181 86 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02009 Vivi-Chr2 94176255 94176797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02009 1 168 C3H Transcription Factor Family AT1G26800 49.123 1.50e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02009 - - vvo:131606629 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02009 2 94176255 94176797 Vivi2g02009 2 94176255 94176797 ECH