Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01974 ATGAGCGATCACTTGGTACTCTTCGTTGACCAACTTGCACGCCCAGTTCCGGTTGACCCTGTTGAGCAGCCTGCGCAGCTTCCTTCCGAACCAACGTTGTCTCCGGTTGCTTCCGATGCCGATGCGGCATCTGGATCCGGAGGATCTGAGTCGGCTGTGGATCAGGATGGAGAGGATTGTGGTGAGGAGGAACCGTTGATCCAGATGGTGGAGTGCCGTATCTGTCAGGAGGAGGATAGCGTTTCCAATTTGGAGACTCCCTGTGCTTGCAGGGGTAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACAGCCCCACCACCTCGCCCTAATCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGCCTATTGGCAATTGCAGAGGCAGAGCGTCAATTCCTGGATGCCGAATATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCTTTTTGTCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTTCTGCGGCATGCACTCTCTGTAACAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCCCTTTTCTTGCTTCGTGCTGCTGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTCTGCAACGGCGGCGACAAAGACAAGAGGCCGCTGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGCAGAGGTCTACAATTCGCGATAGCACCAGTTCCTACAGTACAGCAGGAACAAGTGTAG 870 0.5 MSDHLVLFVDQLARPVPVDPVEQPAQLPSEPTLSPVASDADAASGSGGSESAVDQDGEDCGEEEPLIQMVECRICQEEDSVSNLETPCACRGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLQFAIAPVPTVQQEQV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01974 289 FunFam RING/FYVE/PHD zinc finger protein 60 128 - -
Vivi2g01974 289 Coils Coil 160 180 - -
Vivi2g01974 289 ProSiteProfiles Zinc finger RING-CH-type profile. 64 124 IPR011016 GO:0008270
Vivi2g01974 289 CDD RING_CH-C4HC3_MARCH 72 118 - -
Vivi2g01974 289 SMART ringv_2 71 118 IPR011016 GO:0008270
Vivi2g01974 289 Pfam RING-variant domain 72 117 IPR011016 GO:0008270
Vivi2g01974 289 MobiDBLite consensus disorder prediction 17 60 - -
Vivi2g01974 289 SUPERFAMILY RING/U-box 70 122 - -
Vivi2g01974 289 Pfam Protein of unknown function (DUF3675) 123 242 IPR022143 -
Vivi2g01974 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 123 IPR013083 -
Vivi2g01974 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 252 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01974 Vivi-Chr2 92540730 92545231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01974 71 147 C3H Transcription Factor Family AT2G37950 35.955 1.01e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01974 - - gmx:100779674 455.292