LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g01965	ATGGCTACCATGAAAGACTTAAAACCTTGGCCACCCTCTTCCTTTACCAATGAGTGGGTTTACGACGTTTTCCTCAGTTTTCGAGGAGAGGATACTCGAAAAGGTTTTACCGGAAACCTTTATAACGCTCTTTGTAGAAAAGGAATCAACACTTTCATAGATGACCAAGGGCTTAGGAAAGGAGAAGAAATCACACTAGCTCTTAGCATGGCAATTCAACAATCAAGAATTGCAATTGTGATTTTTTCAAAAAACTATGCATCATCCACTTTCTGTTTGGAAGAACTTACAAAGATCATGGAGTGCATAAAACATAAGGGCAGGTTGGTTTGGCCGGTTTTTTATCAAGTTGACCCTTCTGATGTGCGCCATCAGACAGGGAGCTATGCAAAAGCACTGGCCAACCATGACAGAAAAAAATCCACTGACAAGGCAAAGGTCAAACAGTGGAGGTTAGCTTTGCGAGAAGCGGGTAATGTGGTAGGTTCGCATTTCAAAGACGGGTACGAATATAAGTTCATTGAGAAGATCATTCAAGAGGTCTCTGAAAAGATTAACCGTAAGCCGTTACATGTTGCTAAATACCCTGTTGGGTTAGAATCTCGGGTGCAAAAAGTGAACTCGCTTCTAGAGATTGAATCAAAAGAGGGGATTCACATGGTGGGAGTTTACGGAATGGGTGGAATGGGTAAAACAACACTTGCATGTGCTGTATACAATTACATTGCAGATCAATTTGATAGTCTTTGTTTTCTTGGTGATATTAGAGAAAATTCAGTGAAGCGTGGGTTGGTACAACTACAGGAGATGCTTCTTCTTGAATTAGCTGGGGAGAAAGATGTTAAGTTGTGCAGTTTAAATAAAGGAATTTCTATCATCAAAAGTAGGCTTCGTGGGAAAAAAACTCTATTGATTTTGGATGATGTTGACAGTTTGGAGCAACTAAATGCACTTGCGGGTGGACTTGATTGGTTTGGTTCTGGCAGCAGAGTTATTATCACGACAAGAGATAAGCATCTACTAAATGCTTATGGTGTTGAAAAAGTCTACGAAGTAGAAGGATTGAATCGTAAAGAAGCCCTTCAGTTGTTTGGTTGGAATGCTTTCAAAACACAGGAAATTGATCCAAGATATGTGGACATTTCAAAGAGAGTAGTACTTTATACTAAGGGCCTTCCATTGGCTGTTGAAATAATAGGCTCTGACTTGTATGGTAAAACAAATTTGGAGTGGAAATCTGCTTTAGATACTTACGAAAAAATTCCTCATGAAAATATTCAAGAAATCTTAAGAGTAAGCTACGATGGCTTAAAAGAATTTGAGAAGGAAGTATTTTTAGACATCGCTTGCTTCTTCAAAGGAAGCAAATTAAGTGATGTCATGAACATACTATCTAGTGGTCGTGGCTTTGACCCTAACTACGCTATTCAGGTGTTGATTGATAAGATTCTGGTAAAAGTTGATGATTATCGTGTCAGGATGCATGACATGATTGAAGATATGGGCAGAGAAATTGTGAGGCTGGAAGCACCCTCAAAGCCGGGTGAACGCAGTAGATTATGGTTCTCCAAAGATATTCTTCATGTCTTCAAAGAGAACAAGGGATCTGATAAAACTGAGATCATTATGCTACACCTACTCAAAGATAAAAAAGTACAATGGGATGGAAATGCATTGAAGAAGATGGAAAACCTTAAAGTATTGGTGATAGAAAAAGCTCACTTTTCCAGAGGACCTAATCATCTCCCAAAAAGTTTAAGAGTGCTAAAATGGTGTGATTATCCTGAACCATCATTGCCGGTTCACTTTGATCCGAAGAAACTTGTCATACTTGACTTGTCTTTGAGTTCTATTACTTTTGAAAATCAAGTGATCATGAAATTCAAATCTTTAAGGGAAATGAAGTTAAGTGGATGCCAATCATTAAAGCAAGTACCTGACATGTCAGGAGCTCCGAATTTGAAGAAACTGCATCTCGATTCCTGCAAGAATTTAGTTCAAGTTCACGATTCCGTTGGGTTCCTTGAAAAACTTGAAGATTTGAATCTTAATCGTTGCACCAGTCTCAGTGTTCTTCCTCAAGGCATCAACTTACCCTCTCTTAAAACCATGTCCCTTAGGAATTGTACAAGTATCAAGATTTTTCCAGAAACTTTAGGTAAGATGGTCAACATAACATATCTTGGCTTAAGTGATACCGGCATAAGTGAATTGCCCTACTCCATTGGACTTCTTGTGGGGCTTGCAAACCTTTCTATAGATAGATGCAACGAGCTACTTGAATTACCAAATAGTATTTTTATGTTGCCAAAACTGAAGACTTTGGAGGTTTATAGTTGTAAGAGGCTTGCCCGAATTAAGAAGGGCAAAGATCAACGGCGGGAAACAACGTCTTCAGATATGAAAAGTGTTGTTGACTTCAGCTTTTGCCATCTAACAGAAGAATTTCTCGTTACACTTCTTCCTTGCTTTCACCATGTCACAAATTTATCCCTTGATTACAGCAGTATCACAATCCTTCCATCATGCATCAATGCATGTCACTCTTTGAAGGAACTTACTTTGAATAACTGTACAGAACTTCGAGAAATCAGAGGCCTGCCACCAAACATAAAACATCTTAGTGCAATAAATTGTACATCATTGACTTCCAAATCCAAGGAAATGTTACTGAATCAGATACTACACATTTCCGGGGCCAAATATATCTGTTTTCCAGGATCAACTATCCCAAGTTGGTTCCATCGATATAGAATGGAACCGTCCCTGTCCTTCAAGTTCCGAAACAAATTGCCACAGATGGCTCTTAGTACTATGGTAGTTTCAGGTGGTCTAAAGCTAATGCATTTGATACAAATTTAA	2862	0.3871	MATMKDLKPWPPSSFTNEWVYDVFLSFRGEDTRKGFTGNLYNALCRKGINTFIDDQGLRKGEEITLALSMAIQQSRIAIVIFSKNYASSTFCLEELTKIMECIKHKGRLVWPVFYQVDPSDVRHQTGSYAKALANHDRKKSTDKAKVKQWRLALREAGNVVGSHFKDGYEYKFIEKIIQEVSEKINRKPLHVAKYPVGLESRVQKVNSLLEIESKEGIHMVGVYGMGGMGKTTLACAVYNYIADQFDSLCFLGDIRENSVKRGLVQLQEMLLLELAGEKDVKLCSLNKGISIIKSRLRGKKTLLILDDVDSLEQLNALAGGLDWFGSGSRVIITTRDKHLLNAYGVEKVYEVEGLNRKEALQLFGWNAFKTQEIDPRYVDISKRVVLYTKGLPLAVEIIGSDLYGKTNLEWKSALDTYEKIPHENIQEILRVSYDGLKEFEKEVFLDIACFFKGSKLSDVMNILSSGRGFDPNYAIQVLIDKILVKVDDYRVRMHDMIEDMGREIVRLEAPSKPGERSRLWFSKDILHVFKENKGSDKTEIIMLHLLKDKKVQWDGNALKKMENLKVLVIEKAHFSRGPNHLPKSLRVLKWCDYPEPSLPVHFDPKKLVILDLSLSSITFENQVIMKFKSLREMKLSGCQSLKQVPDMSGAPNLKKLHLDSCKNLVQVHDSVGFLEKLEDLNLNRCTSLSVLPQGINLPSLKTMSLRNCTSIKIFPETLGKMVNITYLGLSDTGISELPYSIGLLVGLANLSIDRCNELLELPNSIFMLPKLKTLEVYSCKRLARIKKGKDQRRETTSSDMKSVVDFSFCHLTEEFLVTLLPCFHHVTNLSLDYSSITILPSCINACHSLKELTLNNCTELREIRGLPPNIKHLSAINCTSLTSKSKEMLLNQILHISGAKYICFPGSTIPSWFHRYRMEPSLSFKFRNKLPQMALSTMVVSGGLKLMHLIQI	953

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g01965	953	Gene3D	-	183	349	IPR027417	-
	Vivi2g01965	953	PRINTS	Disease resistance protein signature	296	310	-	-
	Vivi2g01965	953	PRINTS	Disease resistance protein signature	389	403	-	-
	Vivi2g01965	953	PRINTS	Disease resistance protein signature	220	235	-	-
	Vivi2g01965	953	PRINTS	Disease resistance protein signature	696	712	-	-
	Vivi2g01965	953	SMART	till_3	20	160	IPR000157	GO:0007165
	Vivi2g01965	953	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	448	IPR027417	-
	Vivi2g01965	953	Gene3D	Ribonuclease Inhibitor	800	911	IPR032675	-
	Vivi2g01965	953	Pfam	TIR domain	21	188	IPR000157	GO:0007165
	Vivi2g01965	953	ProSiteProfiles	TIR domain profile.	19	185	IPR000157	GO:0007165
	Vivi2g01965	953	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	819	IPR044974	GO:0006952
	Vivi2g01965	953	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	162	IPR035897	-
	Vivi2g01965	953	Gene3D	-	17	182	IPR035897	-
	Vivi2g01965	953	Gene3D	-	354	438	IPR042197	-
	Vivi2g01965	953	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	187	-	-
	Vivi2g01965	953	SUPERFAMILY	L domain-like	540	905	-	-
	Vivi2g01965	953	Pfam	NB-ARC domain	201	435	IPR002182	GO:0043531
	Vivi2g01965	953	SUPERFAMILY	"Winged helix" DNA-binding domain	425	530	IPR036390	-
	Vivi2g01965	953	Gene3D	Ribonuclease Inhibitor	531	799	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g01965	Vivi-Chr2	92326779	92331095	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g01965	9	786	WRKY Transcription Factor Family	AT4G12020	30.397	4.65e-89	310

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g01965	-		-	ccaj:109800328	1238.02