Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01963 ATGGAAGAGACAAATGATGTTGAAAAAGTTGATGAAGTTATATTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTAGTTGGTTTTTACCTAAAGAGAAAAGTTCAACAAAGGCCTCTATCTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAATTTGCTAGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACTGGTACTGATAGACCTATTTATTCCTCAGAAGGTTCTAAGTGCATTGGTTTGAAGAAATCATTAGTCTTTTACAAAGGTAGAGCTGCTAAAGGACTCAAAACTGACTGGATGATGCATGAGTTTAGGTTACCTTCTCTCGTAGATCCGCTTTCATCGAAGAAGTACTTCGACAAAACCATTCCCGCTAATGAATCTTGGGCTATATGCAGAATATTCAAGAAAACAAATTCTACAACTCAAAGAGCTTTATCTCACTCTTGGGTTTCTTCTCTTTCTGAAACAAGAGCCTCTATGCTAACCAAAAATCAAGAAATCAACCAATTTTGTTCAGACAACATGTCACAAACAAAGAAAGAAACCTTAGCAAACAACTTCATCACTAACAACAATGGTAATAGCCAACAAAACTTTGATGTTGATGTTGATGTTGATCTTACCTCTTATAAATCCATAATTAATCATCACTTACCCAATATTTCAAATGAATATCTTAACACAAACTTGATATTCTCGCCATCTCAACTACAAACATGTGACAACACTTCCAAATCTACAATGGATGATGTTTCATCAATGTTGTTGAACATGTCATCATCATCATCCTCAATGCTTGGTGACTTTAGCAAGACATGTAACGAGGTTACAACTACAAATTTCAACTGTGGCTTGCAAGAGCAATTTAGTGACTACTCAATGCAATTGCAAAGTACATTTGATAACCAATATGATAATAACGCATTGGTAAAGGCTCCTTATTACAATGAACAAGAATTGATGCATTTCAATATTGGTGAGGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTTGTGATGTTCCCTCTAGTTATTATTCTACAACAACCAAGTGTTACACTTAA 1182 0.3579 MEETNDVEKVDEVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGLKTDWMMHEFRLPSLVDPLSSKKYFDKTIPANESWAICRIFKKTNSTTQRALSHSWVSSLSETRASMLTKNQEINQFCSDNMSQTKKETLANNFITNNNGNSQQNFDVDVDVDLTSYKSIINHHLPNISNEYLNTNLIFSPSQLQTCDNTSKSTMDDVSSMLLNMSSSSSSMLGDFSKTCNEVTTTNFNCGLQEQFSDYSMQLQSTFDNQYDNNALVKAPYYNEQELMHFNIGEAWKSNLLWDTSFCPCDVPSSYYSTTTKCYT 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01963 393 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 258 - -
Vivi2g01963 393 FunFam NAC domain-containing protein 35 23 175 - -
Vivi2g01963 393 SUPERFAMILY NAC domain 12 172 IPR036093 GO:0003677|GO:0006355
Vivi2g01963 393 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Vivi2g01963 393 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Vivi2g01963 393 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01963 Vivi-Chr2 92316154 92317976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01963 8 306 NAC Transcription Factor Family AT1G26870 58.521 1.78e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g01963 NAM 3.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01963 - - gmx:100783995 477.633