Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01937 ATGGAATTGGAAGGTGATCATCAAAGCAATGGAATCCGAAGCAGACCAAATTTCCCTCTTCAGCTTTTAGAGAAAAACAACATCATCGAACATGTCTCCGAAGAACAACCTTGTTCAACCACCACCGCCAACGACGGTTCGACTGCCATCGTATCATCAGAGCAACAGAAAAAGCCTCCGCCGAAGCGGGCCTCGACGAAAGATCGGCACACGAAGGTCGACGGACGAGGCCGCCGGATCCGTATGCCGGCTGCCTGCGCGGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACACAAATCCGACGGCGAGACGATTGAGTGGCTACTTCAACAGGCTGAGCCGTCGGTTATAGCAGCAACCGGAACAGGAACAATCCCTGCGAATTTCACGTCTCTGAATATCTCTCTTAGAAGCTCTGGTTCAACTATGTCCGCTCCGTCGCACTATTTTAGAGGTAATTACTTCAACCCTAGTTCGTTTTCGACGGCCGCGGCGGCGGCTCAGCTTCGAAACCGGGCTGAATGGGATAGAACTATGAATATGAATGTTGTGGCTGAAGATTCTAGAAGAACTAACAGTATGTTAGAGAATCCTTCTTCTTTATCAGCGATTTTGAATTTCAACAACGTGCAAAATGCTATTCTTCAAGCGAAACAAGAGCTCCGGGATGAAAACACTGTCTCCGCCGCCGCTGGCGGCGGCGGAGGATTTGAATTGTTGGGTTCTGATTCTGATGGAAGCATAGGGAGGAAAAGAAGGTCATCAGAGCAAGAATTGTTATCACAAAATATGGGAAGCTATTTATTACAATCAAATGTGGGGTCACTTCCTTCAAGCCATGCTTCCAACACGGCAGCGTTTTGGATGGTAACTGGGAATGGGAACCAAACTGTTAATGGTGGTGGTAGTGGTAATGGAAATGATCCAATTTGGGCAATTCCTTCGGTTGGAAATAATGGCTTATATAGAGGAGCTATGTCTATGTCTTCTCCTAATGGAATTCATTTCATGAATTTTGCTTCTCCAATGAATCTGATGCCCGGAAGTCAATTCGGTTCTGGAGTCATCGGCGGTGGTGGAGGCAGCGGTGGTGGTATTCTCGGCGAAAGCAATTTAAATATGCTCTCAGCCATGAATGCCTATAGACAAATTTCTGCAAATGGTATGTCCGAGTCGTCCGGACATCACCACGGCGAAGGTGGAGGAGTAGGAGGAGGAGATGACGACGGACATGACTCAAGCAGTCAACACTCTTAA 1260 0.481 MELEGDHQSNGIRSRPNFPLQLLEKNNIIEHVSEEQPCSTTTANDGSTAIVSSEQQKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSSFSTAAAAAQLRNRAEWDRTMNMNVVAEDSRRTNSMLENPSSLSAILNFNNVQNAILQAKQELRDENTVSAAAGGGGGFELLGSDSDGSIGRKRRSSEQELLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGNGNQTVNGGGSGNGNDPIWAIPSVGNNGLYRGAMSMSSPNGIHFMNFASPMNLMPGSQFGSGVIGGGGGSGGGILGESNLNMLSAMNAYRQISANGMSESSGHHHGEGGGVGGGDDDGHDSSSQHS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01937 419 Pfam TCP family transcription factor 65 201 IPR017887 -
Vivi2g01937 419 MobiDBLite consensus disorder prediction 34 74 - -
Vivi2g01937 419 MobiDBLite consensus disorder prediction 389 419 - -
Vivi2g01937 419 MobiDBLite consensus disorder prediction 402 419 - -
Vivi2g01937 419 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 376 IPR005333 GO:0003700
Vivi2g01937 419 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
Vivi2g01937 419 MobiDBLite consensus disorder prediction 60 74 - -
Vivi2g01937 419 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01937 Vivi-Chr2 90925450 90928173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01937 48 410 TCP Transcription Factor Family AT3G47620 41.330 4.96e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi2g01937 TCP 3.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01937 - - gmx:100809966 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01937 2 90925450 90928173 Vivi2g01937 2 90925450 90928173 ECH
Vivi2g01937 2 90925450 90928173 Vivi1g01980 1 41840594 41842635 PCT