Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01919 ATGTGGAGCCTTGGATTCATTGCTTTGATTAGGGTTTCTATTTTGTTGGCTTTTGCGTCTCTCATTTCTTCTCTCGAGCCCCAACTCGGATCAACCCGCGTCGTCTTTCAGACAAATTATGGAGACATTGAATTTGGTTTCTATCCAACTGTTGCACCCAAAACTGTTGACCATATTTTCAAGCTTGTGAGACTTGGAGGCTATAACACCAATCACTTCTTTCGGGTGGATAAGGGATTTGTAGCCCAAGTAGCTGATGTTGCAAATGGAAGATCTGCTCCCATGAATGAGGAACAAAGACGTGTAGCTGAAAAGACTGTTGTTGGTGAATTTAGTGATGTCAAACATGTTCGCGGCATTCTTTCAATGGGAAGGCACGACGATCCAGATAGTGGTGGATCCTCTTTTTCAATGTTACTTGGAAATGCTCCTCATCTTGATGGGAAGTATGCAATATTTGGAAAAGTTACAAAAGGCGATGATACATTGGCAAAGTTTGAGCAACTACCTACGCGTACAGAGGGAATGTTTGTAATGCCAACGGAGCGGATTACCATCCTCTCATCATATTACTATGATACAGAGACAGAAAATTGTGAGCAAGACAGATCAATTTTGAAGCTCAGGTTAGCTGCATCGGCCGTTGAAGTTGAAAGACAGAGAATGAAATGCTTCCCCTAA 681 0.4229 MWSLGFIALIRVSILLAFASLISSLEPQLGSTRVVFQTNYGDIEFGFYPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVANGRSAPMNEEQRRVAEKTVVGEFSDVKHVRGILSMGRHDDPDSGGSSFSMLLGNAPHLDGKYAIFGKVTKGDDTLAKFEQLPTRTEGMFVMPTERITILSSYYYDTETENCEQDRSILKLRLAASAVEVERQRMKCFP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01919 226 SUPERFAMILY Cyclophilin-like 28 193 IPR029000 -
Vivi2g01919 226 CDD cyclophilin 35 188 - -
Vivi2g01919 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Vivi2g01919 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Vivi2g01919 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Vivi2g01919 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Vivi2g01919 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 13 226 IPR044233 -
Vivi2g01919 226 Gene3D - 22 199 IPR029000 -
Vivi2g01919 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Vivi2g01919 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01919 Vivi-Chr2 89872032 89877255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01919 34 189 U-box Gene Family AT5G67530 29.268 4.53e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01919 - - gmx:100819238 386.341