Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01917 ATGTCTAGCAGAAGATCTCGTTCTAGACAATCTGGTGCTTCCTCTGAGATCACTGATGCTCAAATCACTGATCTCATCTCCAAGTTACAACAACTCATCCCCGAACTTCGCGCTAGCCGCTCCAACAAGGTTTCAGCTTCTAAGGTATTGCAAGAGACTTGCAACTACATAAAAAACTTGCATAGAGAAGTTGATGATTTAAGTGAAAGATTGTCACAACTTTTGGCAACTACAGATTCCAACAGTGCTCAAGCAGCTATTATTAGGAGCTTACTTATGTAA 282 0.4078 MSSRRSRSRQSGASSEITDAQITDLISKLQQLIPELRASRSNKVSASKVLQETCNYIKNLHREVDDLSERLSQLLATTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01917 93 Coils Coil 50 77 - -
Vivi2g01917 93 CDD bHLH_AtPRE_like 17 77 - -
Vivi2g01917 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Vivi2g01917 93 Gene3D - 19 89 IPR036638 GO:0046983
Vivi2g01917 93 FunFam Transcription factor ILI6 7 89 - -
Vivi2g01917 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Vivi2g01917 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Vivi2g01917 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01917 Vivi-Chr2 89695896 89697071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01917 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 71.277 3.80e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g01917 HLH 8.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01917 - - gmx:100791371 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01917 2 89695896 89697071 Vivi2g01917 2 89695896 89697071 ECH
Vivi2g01917 2 89695896 89697071 Vivi3g06265 3 164680013 164681646 ECH
Vivi2g01917 2 89695896 89697071 Vivi6g00264 6 6041127 6042934 ECH