Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01907 ATGCATGAGATGGCTTTCTTCCAAGCAAATTTCATGTTACAAACTCCCCATCACCATGATGATCATCATCATCATCAACCACCTTCACTCAACTCAATTCTACCTCAAGATTATCATGGGGGACCATCATTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATCGAACTCGGAGAAGAAGCCAATATAGCTGAGGAAGATTTATCAGATGATGGATCACAAGCTGGTGAGAAGAAGAGGAGGCTCAACATGGAACAAGTGAAAACACTTGAGAAGAGTTTTGAGCTTGGTAACAAGCTAGAGCCTGAAAGAAAAATGCAGCTTGCAAGAGCTCTTAACTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGAGCAAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATGTCCTCAAAAGACAATATGATGCTGTTAAGTTAGACAATGATGCACTTCAAGCTCAAAACCAAAAACTTCAAGCTGAGATAATGGCATTGAAGAGTAGAGAACCAACTGAATCAATCAACCTAAATAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAAAACAGTTCAGATATCAAGTTAGATATCTCAAGAACACAAGCTAGTGATAGTCCTCTATCAACACACCATACAACAACCACAACAACAAGCAGAACCTTCTTTCCATGTCCATCTGCTAGGCCTCCAGGAGGAATTGCTCAACTTTTTCAAACATCTTCGAGGCCGGAACAACTTCAATGCCAAAAGATTGATCAATTGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTAGCATGGATGATCAAACTGGATTTTGGCCATGGTTGGAGCAACAACAGTTCAATTGA 873 0.3952 MHEMAFFQANFMLQTPHHHDDHHHHQPPSLNSILPQDYHGGPSFLGKRSMSFSSGIELGEEANIAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKLDNDALQAQNQKLQAEIMALKSREPTESINLNKETEGSSSNRSENSSDIKLDISRTQASDSPLSTHHTTTTTTSRTFFPCPSARPPGGIAQLFQTSSRPEQLQCQKIDQLVKEESLSNMFCSMDDQTGFWPWLEQQQFN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01907 290 MobiDBLite consensus disorder prediction 182 230 - -
Vivi2g01907 290 FunFam Homeobox-leucine zipper protein ATHB-13 71 138 - -
Vivi2g01907 290 MobiDBLite consensus disorder prediction 17 38 - -
Vivi2g01907 290 Coils Coil 126 174 - -
Vivi2g01907 290 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Vivi2g01907 290 MobiDBLite consensus disorder prediction 175 232 - -
Vivi2g01907 290 Pfam Homeobox associated leucine zipper 134 174 IPR003106 GO:0006355|GO:0043565
Vivi2g01907 290 CDD homeodomain 79 135 IPR001356 GO:0003677
Vivi2g01907 290 MobiDBLite consensus disorder prediction 63 85 - -
Vivi2g01907 290 Gene3D - 71 140 - -
Vivi2g01907 290 SUPERFAMILY Homeodomain-like 72 136 IPR009057 -
Vivi2g01907 290 SMART HOX_1 77 138 IPR001356 GO:0003677
Vivi2g01907 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 261 IPR045224 GO:0003700
Vivi2g01907 290 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Vivi2g01907 290 Pfam Homeodomain 79 132 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01907 Vivi-Chr2 89255172 89257521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01907 4 290 Homeobox Transcription Factor Family AT1G69780 63.667 4.42e-116 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi2g01907 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01907 K09338 - gmx:100808033 465.307