Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01900 ATGCAAGATATGAAGAAGCTGCAGAATCAGAAGCAGCATCAGAAGCAGAAGCAGCTTGTGAATGAAGAATCGAAGAAGAAGGAGCGGCACATTGTGACGTGGACTCAAGAGGAGGATGATATATTGAGAGATCAAATTGGAATCCATGGAACTGAAAATTGGGCAATAATTGCTTCTAAGTTCAAGGATAAAACTACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGTTGGTCACCAGATGAAGATATGCTCTTATGTGAGGCACAAAAGATATTTGGCAATAGGTGGACAGAAATAGCAAAGGTTGTTTCAGGAAGAACGGATAACGCTGTGAAGAATCGTTTCTCCACACTATGCAAAAAGAGAGCTAAATATGAAGCCTTAGCAAAAGAGAACAACGTTTCATACACGAATTCAAATAACAAAAGGGTTATTTTCCGAGATGCAGCATCTGATTCTGCAGTAGATTATAAGAAAATGAGGAGGTCACATATCCCTGATGATGCGGAAAAGATCAACTTTGCAGACAGATCACATAAACAAAACGAAACTTCAAGAGCACCATTGGCGGTTTTACCTCAAAACTCTCATAATATCAACAACTTGCCAGACCAGAATGATGTCTGCAATGTGAAGTTCGGTGGCTTCGCTCCAAATAACAAGATTCAAGGAACATTCCTTAAAAAGGATGATCCGAAGATAAACGCATTGATGCAACAAGCCGAGCTTCTAACATCACTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAGAATGCATGGAAGATTCTTCAAGAATTTATGAACAGAAACAAAGAATCAGATATTCCTGGATATAAGATTCCCGATTTACAGCTTGTAGATCTTAAAGACTTACTGGAAGACTTAAAGAATAGTAGTGAGGAAATTCAACCATGTTGGAGGTACATGGAGCTATATGAAGACTCTCCAAGCAGTTCCGAAGGATCAACTATTCTGCCTCATTCTGCGGCCGAGAATTTGGAACACTCGCTACATCAAGATAATGGAACTGAACTGAATTCAATACAAATTGGAGATCAAAAGGGAGATGGAGGATGTGATCAAGTGGTTCTTTCTAGCGCAACTATGGTCGATCAAGATATATTCACATCTTGTGAGGAACAGATAAACAATGATGGCATTGGCATTGTTCCATCCCTATCAAGTGCAGAGTTCAGTTCTCCTCTTCAAGTTACCCCTATGTTCAGATCCTTCACTGCAGCAATTCCAAGTCCACAATTTTCAGAAAGTGAAAGGAACTTCCTAATGAAAACACTTGGAATGGATTCTCCATCCCTCAACCCAATTGCCAACCACTCACAACCGCCACTCTGCAAAAGAGCCCTCCTACAAAGTTAA 1416 0.3997 MQDMKKLQNQKQHQKQKQLVNEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPDEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNVSYTNSNNKRVIFRDAASDSAVDYKKMRRSHIPDDAEKINFADRSHKQNETSRAPLAVLPQNSHNINNLPDQNDVCNVKFGGFAPNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDIPGYKIPDLQLVDLKDLLEDLKNSSEEIQPCWRYMELYEDSPSSSEGSTILPHSAAENLEHSLHQDNGTELNSIQIGDQKGDGGCDQVVLSSATMVDQDIFTSCEEQINNDGIGIVPSLSSAEFSSPLQVTPMFRSFTAAIPSPQFSESERNFLMKTLGMDSPSLNPIANHSQPPLCKRALLQS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01900 471 Pfam Myb-like DNA-binding domain 34 94 - -
Vivi2g01900 471 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Vivi2g01900 471 Gene3D - 85 156 - -
Vivi2g01900 471 Gene3D - 20 82 - -
Vivi2g01900 471 CDD SANT 33 77 IPR001005 -
Vivi2g01900 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
Vivi2g01900 471 PANTHER MYB PROTEIN-RELATED 33 185 - -
Vivi2g01900 471 MobiDBLite consensus disorder prediction 1 24 - -
Vivi2g01900 471 SMART sant 30 79 IPR001005 -
Vivi2g01900 471 SMART sant 82 130 IPR001005 -
Vivi2g01900 471 FunFam Transcription factor MYB124 26 82 - -
Vivi2g01900 471 ProSiteProfiles Myb-like domain profile. 34 77 IPR001005 -
Vivi2g01900 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 132 IPR017930 -
Vivi2g01900 471 SUPERFAMILY Homeodomain-like 30 124 IPR009057 -
Vivi2g01900 471 CDD SANT 86 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01900 Vivi-Chr2 89027659 89033371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01900 19 321 MYB Transcription Factor Family AT2G02820 60.377 5.71e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g01900 Myb_DNA-bind_6 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01900 K09422 - gmx:100807667 724.931