Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01898 ATGGGTAACTGTCTTGATTCTTCTGCTAAAGTTGATGCAGCTCAAAGTTCTAGATCCACTTCTGGATCAGGAATTTCGAAAACTACTCCTTCTAGTTTGACGATTCCGTCCTATAGTGATAAGAGCAATTCCTCTAGTCTTCTTCCGACACCGAGGTCTGAGGGTGAAATCTTGTCTTCTCCTAATCTTAAAGCGTTTACGTTCAATGAGCTGAAGAATGCTACGAGGAATTTTCGGCCTGATAGTCTTCTTGGAGAAGGCGGGTTTGGTCATGTTTATAAGGGATGGATTGATGAACAGACTTATACGGCTGCGAAACCTGGATCGGGAATGGTTGTTGCTGTGAAAAGACTTAAGCCGGAAGGGTTTCAAGGTCATAAAGAGTGGTTGACTGAGGTTAATTATTTAGGACAACTGCATCATCCTAATCTGGTTAAATTGATTGGATACTGCTTGGAGGGAGACAACAGGCTTTTGGTATATGAATTTATGCCTAAAGGGAGCTTAGAAAACCATTTGTTTAGAAGAGGACCTCAACCACTGTCTTGGCCAGTGAGAATGAAAGTGGCTATTGGTGCTGCAAGAGGACTCTCTTTTCTTCACAATGCCAAATCACAAGTCATTTACCGCGATTTCAAAGCTTCTAATATCCTTTTGGACGCGGAGTTTAATTCGAAATTATCCGATTTTGGCTTGGCTAAAGCGGGTCCTACCGGTGATAGAACTCATGTGTCTACTCAAGTTGTAGGCACTCAAGGATATGCAGCACCTGAGTATGTTGCAACTGGTCGGCTGACGGCTAAAAGTGACGTATACAGCTTTGGAGTTGTTTTGCTCGAACTTTTATCAGGAAGACGCGCGGTCGACAAAACAATAGCTGGTGTGGACCAGAACCTAGTAGACTGGGCGAAACCATATTTAGGCGATAAGCGAAGACTATTCCGAATAATGGATTCAAAATTAGAAGGCCAATATCCACAAAAAGGAGCATTCATGGCCGCTACACTTGCTCTACAATGCCTTAACAGAGAAGCTAAAGCAAGGCCTCCAATGATAGATGTTTTAGCAACTCTTGAACAGATAGAAGCTCCTAAACAAGCAGCCCGGATTTCGTTATCCGAACAGCAGAGAGTACATGCTCCTGTGAGAAAGTCTCCTGCACGAAACCGAACGCCTTCAAATTTTACGCCTACAGCATCCCCACTGCCATCTGTTCGGCAATCTCCTCGCGCGCATTAG 1239 0.4399 MGNCLDSSAKVDAAQSSRSTSGSGISKTTPSSLTIPSYSDKSNSSSLLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEQTYTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGDNRLLVYEFMPKGSLENHLFRRGPQPLSWPVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNSKLSDFGLAKAGPTGDRTHVSTQVVGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNREAKARPPMIDVLATLEQIEAPKQAARISLSEQQRVHAPVRKSPARNRTPSNFTPTASPLPSVRQSPRAH 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01898 412 PANTHER OS01G0588500 PROTEIN-RELATED 36 362 - -
Vivi2g01898 412 CDD STKc_IRAK 84 361 - -
Vivi2g01898 412 MobiDBLite consensus disorder prediction 387 412 - -
Vivi2g01898 412 ProSiteProfiles Protein kinase domain profile. 78 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01898 412 Gene3D Phosphorylase Kinase; domain 1 54 163 - -
Vivi2g01898 412 Pfam Protein tyrosine and serine/threonine kinase 82 356 IPR001245 GO:0004672|GO:0006468
Vivi2g01898 412 FunFam Serine/threonine-protein kinase BIK1 45 163 - -
Vivi2g01898 412 MobiDBLite consensus disorder prediction 1 56 - -
Vivi2g01898 412 SUPERFAMILY Protein kinase-like (PK-like) 48 358 IPR011009 -
Vivi2g01898 412 MobiDBLite consensus disorder prediction 9 56 - -
Vivi2g01898 412 Gene3D Transferase(Phosphotransferase) domain 1 164 384 - -
Vivi2g01898 412 MobiDBLite consensus disorder prediction 369 412 - -
Vivi2g01898 412 FunFam Probable serine/threonine-protein kinase PBL8 164 377 - -
Vivi2g01898 412 ProSitePatterns Protein kinases ATP-binding region signature. 84 116 IPR017441 GO:0005524
Vivi2g01898 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01898 Vivi-Chr2 88991431 88993829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01898 20 358 Glycoside Hydrolase AT3G07070 49.708 9.86e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi2g01898 PK_Tyr_Ser-Thr 9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01898 - - gmx:100809778 731.48