Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01897 ATGGGTAACTGTCTTGATTCTTCTGCTAAAGTTGATGCAGCTCAAAGTTCTAGATCCACTTCTGGAATTTCGAAAACTACTCCTTCTAGTTTGACGATTCCGTCCTATAGTGATAAGAGCAATTCCTCTAGTCTTCTTCCGACACCGAGGTCTGAGGGTGAAATCTTGTCTTCTCCTAATCTTAAAGCGTTTACGTTCAATGAGCTGAAGAATGCTACGAGGAATTTTCGGCCTGATAGTCTTCTTGGAGAAGGCGGGTTTGGTCATGTTTATAAGGGATGGATTGATGAACAGACTTATACGGCTGCGAAACCTGGATCGGGAATGGTTGTTGCTGTGAAAAGACTTAAGCCGGAAGGGTTTCAAGGTCATAAAGAGTGGTTGACTGAGGTTAATTATTTAGGACAACTGCATCATCCTAATCTGGTTAAATTGATTGGATACTGCTTGGAGGGAGACAACAGGCTTTTGGTATATGAATTTATGCCTAAAGGGAGCTTAGAAAACCATTTGTTTAGAAGAGGACCTCAACCACTGTCTTGGCCAGTGAGAATGAAAGTGGCTATTGGTGCTGCAAGAGGACTCTCTTTTCTTCACAATGCCAAATCACAAGTCATTTACCGCGATTTCAAAGCTTCTAATATCCTTTTGGACGCGGAGTTTAATTCGAAATTATCCGATTTTGGCTTGGCTAAAGCGGGTCCTACCGGTGATAGAACTCATGTGTCTACTCAAGTTGTAGGCACTCAAGGATATGCAGCACCTGAGTATGTTGCAACTGGTCGGCTGACGGCTAAAAGTGACGTATACAGCTTTGGAGTTGTTTTGCTCGAACTTTTATCAGGAAGACGCGCGGTCGACAAAACAATAGCTGGTGTGGACCAGAACCTAGTAGACTGGGCGAAACCATATTTAGGCGATAAGCGAAGACTATTCCGAATAATGGATTCAAAATTAGAAGGCCAATATCCACAAAAAGGAGCATTCATGGCCGCTACACTTGCTCTACAATGCCTTAACAGAGAAGCTAAAGCAAGGCCTCCAATGATAGATGTTTTAGCAACTCTTGAACAGATAGAAGCTCCTAAACAAGCAGCCCGGATTTCGTTATCCGAACAGCAGAGAGTACATGCTCCTGTGAGAAAGTCTCCTGCACGAAACCGAACGCCTTCAAATTTTACGCCTACAGCATCCCCACTGCCATCTGTTCGGCAATCTCCTCGCGCGCATTAG 1233 0.4396 MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLTIPSYSDKSNSSSLLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEQTYTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGDNRLLVYEFMPKGSLENHLFRRGPQPLSWPVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNSKLSDFGLAKAGPTGDRTHVSTQVVGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNREAKARPPMIDVLATLEQIEAPKQAARISLSEQQRVHAPVRKSPARNRTPSNFTPTASPLPSVRQSPRAH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01897 410 FunFam Probable serine/threonine-protein kinase PBL8 162 375 - -
Vivi2g01897 410 ProSiteProfiles Protein kinase domain profile. 76 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01897 410 FunFam Serine/threonine-protein kinase BIK1 43 161 - -
Vivi2g01897 410 MobiDBLite consensus disorder prediction 385 410 - -
Vivi2g01897 410 Pfam Protein tyrosine and serine/threonine kinase 80 354 IPR001245 GO:0004672|GO:0006468
Vivi2g01897 410 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Vivi2g01897 410 SUPERFAMILY Protein kinase-like (PK-like) 46 356 IPR011009 -
Vivi2g01897 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vivi2g01897 410 MobiDBLite consensus disorder prediction 1 54 - -
Vivi2g01897 410 PANTHER OS01G0588500 PROTEIN-RELATED 34 360 - -
Vivi2g01897 410 Gene3D Phosphorylase Kinase; domain 1 52 161 - -
Vivi2g01897 410 MobiDBLite consensus disorder prediction 367 410 - -
Vivi2g01897 410 MobiDBLite consensus disorder prediction 9 54 - -
Vivi2g01897 410 Gene3D Transferase(Phosphotransferase) domain 1 162 382 - -
Vivi2g01897 410 CDD STKc_IRAK 82 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01897 Vivi-Chr2 88991431 88993830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01897 24 356 Glycoside Hydrolase AT3G07070 50.298 1.77e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi2g01897 PK_Tyr_Ser-Thr 8.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01897 - - gmx:100809778 734.176