Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01868 ATGAAGAATTTCTTGTTTTCTTTATACTTCTTGTTTCCATTCATCTTTACAATTATTCTCATGCTCCTCACTCCAATTCCATGTGCACAATTAACAACACCAGAAACCAAAGTTCTTCTTCAAATTCAAACACTTCTTGAATACCCTCAACTTCTTCACAAATGGAAGAATCTCACCAACTTCTGCAACCTCTCTCCATCACCTTCCTTCACCATCGTCTGCACAAAGAATCATGTAACAGAATTAACAATCATTGGAAACAAAACAAAGCCAGTTTCAGCAAGATTCTCCACTGATTCCTTTTTCACTGTTTTAACAAAGCTTTCAAACATGAAGGTTTTGTCATTGGTGTCACTTGGTTTGTGGGGTCCATTGCCTTCAAAAATCTCTAGGCTTAAGTCTCTTGAAGTTTTCAACATTACTTCAAATTTCATCTATGGAGAAATTCCAGTATCAGTTTCATCTTTGAAGAATCTCAAGAGTCTTGTCTTGGCTGATAACTTTTTCAATGGAAATGTGCCTAATCTCACAAGATTAGCCTCTCTTGAAGAGATTAATCTTAGAAACAACCGATTCGGCCCCGAGTTTCCTTCGTCTTTGTTCTCTCTTCCTTTGCTACATAGCCTAAACTTGGCTGCAAATCAATTAACTGGAACGATTTCGGCGAATATATCTTGTAGTCCTTCTTTGAGATTTCTTGATATCTCACACAATTTTCTACAAGGAAAACTGCCATGGTGCATTGATTCGATGTCGTTGAACCGAACAATGTTTTACTCTGGCAACTGTCTGTCAACAAGAAATCTCAGCGATCAACATCCGTCGTCGTATTGCAAGAAATCATCAGTGTTGAACGTTAAGCCGAGATTCGAGAGGCCGAATAAATCAAAGATGCGACTAGGAGGAGTTGTACTAATCGGTATTATCGGAGGTTTCGTAGGAGCTGCAGTGGTTTTGATTCTACTCTTTCTGTTCATTTTGAGAAAGTTCAATGCAGAAAAAGCTTCTGTCACTGCTTATTCAAGACCAAATATTCATGCAAGTAAAAGAAATGTTCCTCAGCTGGTGAGGATAGCTTCAAATGGATTACCACCTTATAGAATTTTCAGAATAAAAGAAATCGAAGATGCAACCGACAACTTCGACTCGTCGAATCTATTAGGAGAAGGATCACAAGGACAGCAATATAAAGGCAGACTCAAAGATGGTTCAATGGTGATGGTTAATCAGAAGAGTTTGAGCAAAATCATTGATCAGAATTTGAAGGTGTTACCTTATTTAAGGCATAGGCATTTGGTGAGTGTTATAGGTCACTGTGCTATTAACAATGAGGATCATCCCAAAATGAAAAGCACAATGTTCATAGTATTTGAACACATCTCAAACATGTCATTGAGGATTCATCTTACAGATAGCAGAAAAAATGAGATGCTTAAGTGGCAACAAAGAATGGCGATTATCATCGGCGTTGCAAAAGGAATCAAGTTCTTACACACTGGAGTAACTCCTGGCATATTTGGAAACAACATTAAGATTGAGAATATTATGTTGGACAATAATCTCAATCCAAAAGTTAGTGGATATAGCATTCCATTTTCATGCAAGAAAGGTTCTGAGAGAAAACTTAAACAAAAAAGTGCACACAATCATATTAGCAGCATCAATAGTGCAGAAAAGGAAGACATATATCAATTTGGATTGATTCTACTTGAACTTATCACTGGCAAAGTAGTTACATCTTCTATGGAAGTTGAGGTGCTGAAGTATGAGCTTGAGAGAGGTTTATGTGAAGTTGCATCACCGAACGCGTTAAGGAGTGCTATCGATCCTTTGCTCCATGGGACTTATGCACATGAATCATTGAAGACTGCAGTTCTGATCACCATCATCTGTCTCAGCAAGGTTCCCGGTGACCGGCCTTCTATAGAAGATATTCTCTGGAATCTGCAGTACTCCATGCAAGTTCAAGAAGGAAGGTCCAGTAAAGCCTCAACATGA 1998 0.3824 MKNFLFSLYFLFPFIFTIILMLLTPIPCAQLTTPETKVLLQIQTLLEYPQLLHKWKNLTNFCNLSPSPSFTIVCTKNHVTELTIIGNKTKPVSARFSTDSFFTVLTKLSNMKVLSLVSLGLWGPLPSKISRLKSLEVFNITSNFIYGEIPVSVSSLKNLKSLVLADNFFNGNVPNLTRLASLEEINLRNNRFGPEFPSSLFSLPLLHSLNLAANQLTGTISANISCSPSLRFLDISHNFLQGKLPWCIDSMSLNRTMFYSGNCLSTRNLSDQHPSSYCKKSSVLNVKPRFERPNKSKMRLGGVVLIGIIGGFVGAAVVLILLFLFILRKFNAEKASVTAYSRPNIHASKRNVPQLVRIASNGLPPYRIFRIKEIEDATDNFDSSNLLGEGSQGQQYKGRLKDGSMVMVNQKSLSKIIDQNLKVLPYLRHRHLVSVIGHCAINNEDHPKMKSTMFIVFEHISNMSLRIHLTDSRKNEMLKWQQRMAIIIGVAKGIKFLHTGVTPGIFGNNIKIENIMLDNNLNPKVSGYSIPFSCKKGSERKLKQKSAHNHISSINSAEKEDIYQFGLILLELITGKVVTSSMEVEVLKYELERGLCEVASPNALRSAIDPLLHGTYAHESLKTAVLITIICLSKVPGDRPSIEDILWNLQYSMQVQEGRSSKAST 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01868 665 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515
Vivi2g01868 665 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 460 665 - -
Vivi2g01868 665 Pfam Protein kinase domain 383 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01868 665 Gene3D Phosphorylase Kinase; domain 1 357 449 - -
Vivi2g01868 665 SUPERFAMILY Protein kinase-like (PK-like) 363 649 IPR011009 -
Vivi2g01868 665 ProSiteProfiles Protein kinase domain profile. 381 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01868 665 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 32 201 - -
Vivi2g01868 665 SUPERFAMILY L domain-like 37 266 - -
Vivi2g01868 665 Gene3D Ribonuclease Inhibitor 32 291 IPR032675 -
Vivi2g01868 665 Gene3D Transferase(Phosphotransferase) domain 1 460 664 - -
Vivi2g01868 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 92 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01868 Vivi-Chr2 87022067 87024331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01868 48 658 Miscellaneous Gene Families AT3G03770 38.536 1.96e-154 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vivi2g01868 Pkinase 1.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01868 - - mtr:11414733 924.465