Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01865 ATGAAGATGTTGCAGGCACAATCTTATACCACCACTGCCACCAACCCAATCTCAGTCCCAAACCACTCTTTCATCACTCCCAAGAAATCCATTTCTCCAAGGCGCGTGGCTCGCACTTTCTCCTCCAATCTTCCACAATCCTCTTTCACACGTAGCCTTCCAGAGCTTGTACAACCGACACCCAAACTGAAATCACTTCCTTCACCACCGCCTCAACGTTCTCCTCCACCAGCTGTAGAATTGCCAGCTAGGGTTTATGTTGGTTATTCAGTTTACAAAGGGAAAGCTGTGCTCACTGTGGCTCCTAGACCTCCGGAATTCACTTCATTGGATTCAGGGGCATTCAAGATATCTAGAGAAGGTTGTTTGCTGCTCCAGTTTGCTCCTTCGGCTGGTCCGTTACAATATGATTGGAACAGAAAACAGGTATTTTCGCTGTCAGTGGAAGAAATTGGAAGTCTAATCAACCTTGGTGCGAAGGAGTCTTGTGAATTTTTTCATGACCCTTTAAAACGAAAAAGTGGTGAAGGTAAAAGGAGTAAAGTTTTGAAGGTGGAGCCACTTCACGACGGTTCTGGTCATATGTTTAACCTAAGTGTTCAAAACAAGGCCGAGAACATAAACGAAAACATCTTGATCCCTGTCTCAAAAGCCGAGTTTGCTGTATTCAATTCACTTTTCAATTTTATCACGCCATGCCTTTTAGGTTGGAATGCTTTTGGCAGCTCTATAAAACCAGAAGTAAATATTGCAAGCCAAGAAAAGAAGACAAAGAATGGATTAGATAGGGCCATTTCTGCAATATAG 807 0.4337 MKMLQAQSYTTTATNPISVPNHSFITPKKSISPRRVARTFSSNLPQSSFTRSLPELVQPTPKLKSLPSPPPQRSPPPAVELPARVYVGYSVYKGKAVLTVAPRPPEFTSLDSGAFKISREGCLLLQFAPSAGPLQYDWNRKQVFSLSVEEIGSLINLGAKESCEFFHDPLKRKSGEGKRSKVLKVEPLHDGSGHMFNLSVQNKAENINENILIPVSKAEFAVFNSLFNFITPCLLGWNAFGSSIKPEVNIASQEKKTKNGLDRAISAI 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01865 268 Pfam Whirly transcription factor 91 225 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vivi2g01865 268 MobiDBLite consensus disorder prediction 63 78 - -
Vivi2g01865 268 MobiDBLite consensus disorder prediction 1 31 - -
Vivi2g01865 268 SUPERFAMILY ssDNA-binding transcriptional regulator domain 84 260 IPR009044 GO:0003677|GO:0006355
Vivi2g01865 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 49 258 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vivi2g01865 268 MobiDBLite consensus disorder prediction 59 79 - -
Vivi2g01865 268 MobiDBLite consensus disorder prediction 1 28 - -
Vivi2g01865 268 Gene3D Transcriptional Coactivator Pc4; Chain A 79 256 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01865 Vivi-Chr2 86941737 86944807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01865 74 247 Whirly Transcription Factor Family AT1G14410 70.690 6.17e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vivi2g01865 Whirly 4.3e-56 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01865 K26559 - mnt:112091579 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01865 2 86941737 86944807 Vivi2g01865 2 86941737 86944807 ECH