Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01864 ATGAAGATGTTGCAGGCACAATCTTATACCACCACTGCCACCAACCCAATCTCAGTCCCAAACCACTCTTTCATCACTCCCAAGAAATCCATTTCTCCAAGGCGCGTGGCTCGCACTTTCTCCTCCAATCTTCCACAATCCTCTTTCACACGTAGCCTTCCAGAGCTTGTACAACCGACACCCAAACTGAAATCACTTCCTTCACCACCGCCTCAACGTTCTCCTCCACCAGCTGTAGAATTGCCAGCTAGGGTTTATGTTGGTTATTCAGTTTACAAAGGGAAAGCTGTGCTCACTGTGGCTCCTAGACCTCCGGAATTCACTTCATTGGATTCAGGGGCATTCAAGATATCTAGAGAAGGTTGTTTGCTGCTCCAGTTTGCTCCTTCGGCTGGTCCGTTACAATATGATTGGAACAGAAAACAGGTATTTTCGCTGTCAGTGGAAGAAATTGGAAGTCTAATCAACCTTGGTGCGAAGGAGTCTTGTGAATTTTTTCATGACCCTTTAAAACGAAAAAGGTGTTCAAAACAAGGCCGAGAACATAAACGAAAACATCTTGATCCCTGTCTCAAAAGCCGAGTTTGCTGTATTCAATTCACTTTTCAATTTTATCACGCCATGCCTTTTAGGTTGGAATGCTTTTGGCAGCTCTATAAAACCAGAAGTAAATATTGCAAGCCAAGAAAAGAAGACAAAGAATGGATTAGATAG 714 0.4356 MKMLQAQSYTTTATNPISVPNHSFITPKKSISPRRVARTFSSNLPQSSFTRSLPELVQPTPKLKSLPSPPPQRSPPPAVELPARVYVGYSVYKGKAVLTVAPRPPEFTSLDSGAFKISREGCLLLQFAPSAGPLQYDWNRKQVFSLSVEEIGSLINLGAKESCEFFHDPLKRKRCSKQGREHKRKHLDPCLKSRVCCIQFTFQFYHAMPFRLECFWQLYKTRSKYCKPRKEDKEWIR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01864 237 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 49 189 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vivi2g01864 237 SUPERFAMILY ssDNA-binding transcriptional regulator domain 84 183 IPR009044 GO:0003677|GO:0006355
Vivi2g01864 237 MobiDBLite consensus disorder prediction 63 78 - -
Vivi2g01864 237 MobiDBLite consensus disorder prediction 59 79 - -
Vivi2g01864 237 Gene3D Transcriptional Coactivator Pc4; Chain A 79 200 IPR009044 GO:0003677|GO:0006355
Vivi2g01864 237 Pfam Whirly transcription factor 91 191 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vivi2g01864 237 MobiDBLite consensus disorder prediction 1 28 - -
Vivi2g01864 237 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01864 Vivi-Chr2 86941734 86944807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01864 74 190 Whirly Transcription Factor Family AT1G14410 65.812 6.63e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vivi2g01864 Whirly 3.6e-35 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01864 K26559 - mnt:112091579 159.073