Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01857 ATGATGGCAAAATTGTACCATCTCTTTCATTTAACCATTTTAGTGGTAATCATACCTATATTAGTGCATGCTAATGTCAAAGATGAAGAATCATATTGGGATAATATATTGCCATTTATTAATGATACATATTGGCGAGAAAAAGCGGCAAATGCTGAAAAAACAAACAACAGAGCTTATACACCTGACCCATATGCCGTCACTGGAAACATGACTTCTATTGTTAGCGAGATGATAACTGGAGGTAATACTGGAAGAAGGAATCTAGGGGGACAAAAAATGGGAAGAGGTAGTCCATGTATGGCTACAAATCCCATTGACAGGTGTTGGAGGTGTGATCCTAACTGGGCAACAAACCGCAAGAAGCTTGCAAATTGTGTGCAGGGTTTTGGCAGGAAGACTACGGGTGGAAAAGCCGGTCCTATCTACGTGGTAATTGATCCTTCTGATAATAACATGCAAAATCCACTTCCAGGTACTCTTCGTCATGCAGTTACGAGAAATGGACCTTTGTGGATCATCTTTGCTCATAGCATGGTCATTAAGCTCAATCAGGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAGCTAATGTTGTCATTGCTAAAGGTGCTGGTATTACTATCCAATTTATCAGTAATGTTATCATCCACGGGATAAAAGTTTTTGACATCCAAGTTGGTAGTGGGGGACTTATTAGAGATGCCGAGAACCATTTTGGTCTAAGGACTAGGAGTGATGGTGATGGAATTTCAATTTTTGGATCCAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGCAAAGATGGACTCATTGATGTAATTATGGGATCTACTGCAATTACCATTTCCAATTGCCATTTCACAGATCACAACGAGGCGATGCTGTTTGGTGCGAGTAATGACTATGATGGTGATAAGAAAATGCAAATTACACTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGTAGATATGGTTTTATCCATGTGCTTAACAATGACTACACTCATTGGGAAATGTATGCTATTGGTGGTAGCCAAAACCCTACTATTATAAGTGAGGGTAACCGATTCATAGCCCCTAACAACCCCCATGCTAAAGAGATAACAAAGAGGGATTACTCACCAGAGTCAGAATGGAAAAACTGGCAATGGAGATCAATCAACGATGTCTATATGAACGGAGCATTTTTTGTACAAGGAGGACCTGTGCTGAATAACAGACCATTCTCAAGAAAGGACATGATCAAATCTAGGCCTGGAACTTATGTAAAAAGGCTTACTCGTTATTCTGGAAGCCTTAGATGCAGAATGGGGAAGCCTTGTTAG 1362 0.4009 MMAKLYHLFHLTILVVIIPILVHANVKDEESYWDNILPFINDTYWREKAANAEKTNNRAYTPDPYAVTGNMTSIVSEMITGGNTGRRNLGGQKMGRGSPCMATNPIDRCWRCDPNWATNRKKLANCVQGFGRKTTGGKAGPIYVVIDPSDNNMQNPLPGTLRHAVTRNGPLWIIFAHSMVIKLNQELIMTSDKTIDGRGANVVIAKGAGITIQFISNVIIHGIKVFDIQVGSGGLIRDAENHFGLRTRSDGDGISIFGSSNIWIDHVSMRNCKDGLIDVIMGSTAITISNCHFTDHNEAMLFGASNDYDGDKKMQITLAFNHFGKRLIQRMPRCRYGFIHVLNNDYTHWEMYAIGGSQNPTIISEGNRFIAPNNPHAKEITKRDYSPESEWKNWQWRSINDVYMNGAFFVQGGPVLNNRPFSRKDMIKSRPGTYVKRLTRYSGSLRCRMGKPC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01857 453 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Vivi2g01857 453 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Vivi2g01857 453 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Vivi2g01857 453 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Vivi2g01857 453 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Vivi2g01857 453 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Vivi2g01857 453 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Vivi2g01857 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Vivi2g01857 453 SUPERFAMILY Pectin lyase-like 104 443 IPR011050 -
Vivi2g01857 453 Pfam Pectate lyase 187 369 IPR002022 -
Vivi2g01857 453 PANTHER PECTATE LYASE 18-RELATED 52 451 IPR045032 GO:0030570
Vivi2g01857 453 SMART amb_all 178 375 IPR002022 -
Vivi2g01857 453 Pfam Pectate lyase, N terminus 42 89 IPR007524 GO:0030570
Vivi2g01857 453 Gene3D - 103 446 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01857 Vivi-Chr2 86002196 86004698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01857 42 453 Polysaccharide Lyase AT1G14420 61.412 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01857 K01728 - gmx:100810857 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01857 2 86002196 86004698 Vivi2g01857 2 86002196 86004698 ECH