Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01856 ATGATAACTGGAGGTAATACTGGAAGAAGGAATCTAGGGGGACAAAAAATGGGAAGAGGTAGTCCATGTATGGCTACAAATCCCATTGACAGGTGTTGGAGGTGTGATCCTAACTGGGCAACAAACCGCAAGAAGCTTGCAAATTGTGTGCAGGGTTTTGGCAGGAAGACTACGGGTGGAAAAGCCGGTCCTATCTACGTGGTAATTGATCCTTCTGATAATAACATGCAAAATCCACTTCCAGGTACTCTTCGTCATGCAGTTACGAGAAATGGACCTTTGTGGATCATCTTTGCTCATAGCATGGTCATTAAGCTCAATCAGGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAGCTAATGTTGTCATTGCTAAAGGTGCTGGTATTACTATCCAATTTATCAGTAATGTTATCATCCACGGGATAAAAGTTTTTGACATCCAAGTTGGTAGTGGGGGACTTATTAGAGATGCCGAGAACCATTTTGGTCTAAGGACTAGGAGTGATGGTGATGGAATTTCAATTTTTGGATCCAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGCAAAGATGGACTCATTGATGTAATTATGGGATCTACTGCAATTACCATTTCCAATTGCCATTTCACAGATCACAACGAGGCGATGCTGTTTGGTGCGAGTAATGACTATGATGGTGATAAGAAAATGCAAATTACACTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGTAGATATGGTTTTATCCATGTGCTTAACAATGACTACACTCATTGGGAAATGTATGCTATTGGTGGTAGCCAAAACCCTACTATTATAAGTGAGGGTAACCGATTCATAGCCCCTAACAACCCCCATGCTAAAGAGATAACAAAGAGGGATTACTCACCAGAGTCAGAATGGAAAAACTGGCAATGGAGATCAATCAACGATGTCTATATGAACGGAGCATTTTTTGTACAAGGAGGACCTGTGCTGAATAACAGACCATTCTCAAGAAAGGACATGATCAAATCTAGGCCTGGAACTTATGTAAAAAGGCTTACTCGTTATTCTGGAAGCCTTAGATGCAGAATGGGGAAGCCTTGTTAG 1131 0.412 MITGGNTGRRNLGGQKMGRGSPCMATNPIDRCWRCDPNWATNRKKLANCVQGFGRKTTGGKAGPIYVVIDPSDNNMQNPLPGTLRHAVTRNGPLWIIFAHSMVIKLNQELIMTSDKTIDGRGANVVIAKGAGITIQFISNVIIHGIKVFDIQVGSGGLIRDAENHFGLRTRSDGDGISIFGSSNIWIDHVSMRNCKDGLIDVIMGSTAITISNCHFTDHNEAMLFGASNDYDGDKKMQITLAFNHFGKRLIQRMPRCRYGFIHVLNNDYTHWEMYAIGGSQNPTIISEGNRFIAPNNPHAKEITKRDYSPESEWKNWQWRSINDVYMNGAFFVQGGPVLNNRPFSRKDMIKSRPGTYVKRLTRYSGSLRCRMGKPC 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01856 376 Gene3D - 26 369 IPR012334 -
Vivi2g01856 376 MobiDBLite consensus disorder prediction 1 20 - -
Vivi2g01856 376 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Vivi2g01856 376 PRINTS Pollen allergen Amb family signature 173 194 IPR018082 -
Vivi2g01856 376 PRINTS Pollen allergen Amb family signature 109 125 IPR018082 -
Vivi2g01856 376 PRINTS Pollen allergen Amb family signature 49 66 IPR018082 -
Vivi2g01856 376 PRINTS Pollen allergen Amb family signature 347 370 IPR018082 -
Vivi2g01856 376 PRINTS Pollen allergen Amb family signature 253 272 IPR018082 -
Vivi2g01856 376 PRINTS Pollen allergen Amb family signature 317 341 IPR018082 -
Vivi2g01856 376 PRINTS Pollen allergen Amb family signature 73 98 IPR018082 -
Vivi2g01856 376 SMART amb_all 101 298 IPR002022 -
Vivi2g01856 376 SUPERFAMILY Pectin lyase-like 27 366 IPR011050 -
Vivi2g01856 376 Pfam Pectate lyase 110 292 IPR002022 -
Vivi2g01856 376 PANTHER PECTATE LYASE 18-RELATED 11 374 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01856 Vivi-Chr2 86002192 86004698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01856 6 376 Polysaccharide Lyase AT1G14420 65.617 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01856 K01728 - gmx:100796307 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01856 2 86002192 86004698 Vivi2g01856 2 86002192 86004698 ECH
Vivi2g01856 2 86002192 86004698 Vivi6g00187 6 4773556 4775675 ECH