Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01846 ATGGGGTTGTTGGGTTCTGAGAATGGTAAAGTTGTGGAGGATTGGGATGTGTGTAAATCAAAGGAGAGTAAGAAGAAGAACAAGAAGAATAAAGAGAATGAGAGTATGGTTAAAGAGAAAAAAACTGGGTGTTGGGTTAGGTTGAGATTTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATACCTCAGTCAGTGGCAGTGGTACCGGCACCGTCACCAGTACTCATTATGCTGAAAGTAAATCGACTAATGATACAAGTCGATGCCAACCTGCGGCTCCAGTAATCTCTTCCACAACAACTAGTAATGCAGAAAGCAATTCGTCCACTTCTAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTACGGAAATTCTCTTTCAATGAACTTAAGTCAGCAACAAGAAATTTCCGGCCCGAGAGTTTTCTTGGCGAAGGTGGGTTCGGTTGTGTTTTCAAGGGTTGGATTGAAGAAAACGGAACTGCTGCAGTGAAGCCTGGTACAGGGCTTACCGTCGCTGTGAAAACCCTTAACCATGACGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAGGTAAATTTTCTTGGTGATTTAGTTCATCAGAACCTTGTTAAACTCGTTGGTTACTGTATTGAAGATAATCAAAGGTTGTTAGTGTATGAATTCATGCCTCGAGGAAGCCTGGAAAATCACTTATTTAGGAGTAAGTTACTATTTCATGTTTGGAAATTCAGATTATATAATTGTCAATTTTCTCATGTAAAAATTAATATTATATCGTACGTAGGATCTCTGCCTCTTCCATGGTCGATTAGGATGAAAATTGCGCTAGGAGCTGCACAGGGTCTTGCTTTTCTTCACGAAGAAGCTGAACGACCAGTGATATATAGGGATTTTAAAACTTCGAATATACTATTAGACGCGGACTACAATGCTAAGCTCTCGGACTTTGGTCTTGCCAAAGATGGTCCTGAAGGCGATAAAACCCATGTGTCTACTCGAGTTATGGGAACCTATGGTTACGCAGCACCAGAATATGTCATGACAGGTCATCTTACATCAAAAAGTGACGTGTACAGTTTCGGAGTCGTACTACTTGAGATGTTAACCGGCAGAAGATCTATGGACAAACACCGACCCAACGGTGAACACAACCTTGTCGAATGGGCTCGACCGCATCTAGGAGAACGAAGAAGGTTCTACCGCTTAATAGACCCTCGTCTCGAAGGTCACTTTTCTGTAAAAGGAGCTCAGAAAGCTGCGCAACTAGCCGCCCACTGCCTAAGCAGAGATCCAAAAGCGAGACCCCTAATGAGCGAAGTCGTGGAAGCTTTAAAGCCTCTTCCAAACCTTAAAGACATGGCAAGCTCATCATACTATTTCCAAACAATGCAAGCCGATCGGTTTGGAGCAAGTCCAAACACTAGAAGCGCACATGTACAAGGAGCATCGCTCGCTCGGAATGGACAACAGCGAAGGAGCCTTTCGATACCGAATGGTACTCATGTATCTCCTTATCATCACAAGTTTCCCCAACAATCACCTAAACCTAATGTCAAAGCATAG 1572 0.4326 MGLLGSENGKVVEDWDVCKSKESKKKNKKNKENESMVKEKKTGCWVRLRFFGSCISSRSKVDTSVSGSGTGTVTSTHYAESKSTNDTSRCQPAAPVISSTTTSNAESNSSTSKLEEELKIASRLRKFSFNELKSATRNFRPESFLGEGGFGCVFKGWIEENGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLVGYCIEDNQRLLVYEFMPRGSLENHLFRSKLLFHVWKFRLYNCQFSHVKINIISYVGSLPLPWSIRMKIALGAAQGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSVKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFGASPNTRSAHVQGASLARNGQQRRSLSIPNGTHVSPYHHKFPQQSPKPNVKA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01846 523 MobiDBLite consensus disorder prediction 16 36 - -
Vivi2g01846 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Vivi2g01846 523 Gene3D Phosphorylase Kinase; domain 1 113 224 - -
Vivi2g01846 523 Pfam Protein tyrosine and serine/threonine kinase 144 447 IPR001245 GO:0004672|GO:0006468
Vivi2g01846 523 SUPERFAMILY Protein kinase-like (PK-like) 114 446 IPR011009 -
Vivi2g01846 523 MobiDBLite consensus disorder prediction 59 111 - -
Vivi2g01846 523 ProSitePatterns Protein kinases ATP-binding region signature. 145 177 IPR017441 GO:0005524
Vivi2g01846 523 FunFam Probable serine/threonine-protein kinase PBL8 256 468 - -
Vivi2g01846 523 PANTHER OS01G0588500 PROTEIN-RELATED 85 450 - -
Vivi2g01846 523 MobiDBLite consensus disorder prediction 59 112 - -
Vivi2g01846 523 MobiDBLite consensus disorder prediction 473 503 - -
Vivi2g01846 523 CDD STKc_IRAK 145 450 - -
Vivi2g01846 523 Gene3D Transferase(Phosphotransferase) domain 1 225 468 - -
Vivi2g01846 523 FunFam Serine/threonine-protein kinase BIK1 106 224 - -
Vivi2g01846 523 ProSiteProfiles Protein kinase domain profile. 139 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01846 523 MobiDBLite consensus disorder prediction 473 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01846 Vivi-Chr2 85603532 85607501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01846 86 447 Glycoside Hydrolase AT3G07070 50.276 7.58e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vivi2g01846 PK_Tyr_Ser-Thr 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01846 - - psat:127119571 933.324