Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g01841 | ATGGAATCAATAAACCAATCCTTAGACAAATTCTACTCTCCCCACGCGCGCGAATCGCTCGACGAATTGTCTGAGCACTTCACAATCACCGACCCTTCCATTTCCGGTCACCCCATAGTCTTCGCCAGCCACGCGTTTCTCAAGATGACCGGCTTCACGCGCGACGAAGTCGTTGGTAGAGGCGGTGCCATGTTTCAGGGTCCAGCCACGTGTCGTAGGGCGGTGATGCAAATTCGGGAAGCTGTTAGGGAGGAAAGAGAGGTTCAAGTTGTTTTGGTTAATTATAGGAAAAACGGCACGCCGTTTTGGGTTTTGTTGAATGTTTGTCCTGTTTTTAGTGCCAACCGTGGTGCTGTTGTTCATTTTGTTGCTGTTCAGGTTCCGTTACATGGGAATTCCAGGGTTTGTAGTTCTGTTGCTCATGAATTTGTGTTCCGTTGTTGTCGGAAGGAAGTTTGTTCCGATTCTTTGGCGGAACTTAGTCGGGTTTCTTCGGCTAATCGAGTGTTGGAACATGATATCTCGGAATTGGAGAGTGAAGAGCCGCGTGAGGCAAGTGGTGATGAGAGGAGAAGTGCTGCGATGGCCATGGACAACATCTTTTCTGTGCTAACCCACTTTAGCGAGTTGACGGGAAAATTGGTGTGTAGAAAGAGATGCAGCATGCCTGACGCGGGTCTTCTTAGCTCCTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGTTTATGCCAGTGACGCCTTCATGAAATTGACAGGTTATGCGAGAGATGAGGTATTGGGCCGCAATTGTAGATTTTTAGGTGGAAGAGATACTGATGCCTCAACTCTACATCTGATAAAGGAGAGCGTCAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTACTTCACATCTCACCTGTTCGGGATGCTTCTGGAAAGGTAGCATACTTTGTGGGAGTCCAAATAGAAGTCGACTATAAAAACGAGGATTTTAGGCGGTGTTGGAGACCTGACATGAAGCAGCTTAGCGTGGTTGGTGGAGTCAAGGTTGCAGTGAGGAGTTTATCCATGTCTGCTGGGTCGTCAAAGACATAG | 1155 | 0.4632 | MESINQSLDKFYSPHARESLDELSEHFTITDPSISGHPIVFASHAFLKMTGFTRDEVVGRGGAMFQGPATCRRAVMQIREAVREEREVQVVLVNYRKNGTPFWVLLNVCPVFSANRGAVVHFVAVQVPLHGNSRVCSSVAHEFVFRCCRKEVCSDSLAELSRVSSANRVLEHDISELESEEPREASGDERRSAAMAMDNIFSVLTHFSELTGKLVCRKRCSMPDAGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYARDEVLGRNCRFLGGRDTDASTLHLIKESVKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEVDYKNEDFRRCWRPDMKQLSVVGGVKVAVRSLSMSAGSSKT | 384 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g01841 | 384 | Gene3D | PAS domain | 26 | 203 | - | - | |
| Vivi2g01841 | 384 | Gene3D | PAS domain | 242 | 369 | - | - | |
| Vivi2g01841 | 384 | Pfam | PAS domain | 37 | 126 | IPR000014 | - | |
| Vivi2g01841 | 384 | Pfam | PAS domain | 242 | 342 | IPR000014 | - | |
| Vivi2g01841 | 384 | CDD | PAS | 251 | 344 | IPR000014 | - | |
| Vivi2g01841 | 384 | SMART | pac_2 | 305 | 347 | IPR001610 | - | |
| Vivi2g01841 | 384 | SMART | pac_2 | 89 | 132 | IPR001610 | - | |
| Vivi2g01841 | 384 | ProSiteProfiles | PAS repeat profile. | 35 | 60 | IPR000014 | - | |
| Vivi2g01841 | 384 | CDD | PAS | 39 | 125 | IPR000014 | - | |
| Vivi2g01841 | 384 | Coils | Coil | 160 | 180 | - | - | |
| Vivi2g01841 | 384 | ProSiteProfiles | PAC domain profile. | 302 | 356 | IPR000700 | - | |
| Vivi2g01841 | 384 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 27 | 125 | IPR035965 | - | |
| Vivi2g01841 | 384 | PANTHER | PROTEIN TWIN LOV 1 | 2 | 374 | - | - | |
| Vivi2g01841 | 384 | NCBIfam | PAS domain S-box protein | 39 | 120 | IPR000014 | - | |
| Vivi2g01841 | 384 | NCBIfam | PAS domain S-box protein | 255 | 345 | IPR000014 | - | |
| Vivi2g01841 | 384 | ProSiteProfiles | PAS repeat profile. | 255 | 277 | IPR000014 | - | |
| Vivi2g01841 | 384 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 245 | 342 | IPR035965 | - | |
| Vivi2g01841 | 384 | FunFam | Protein TWIN LOV 1 isoform D | 26 | 206 | - | - | |
| Vivi2g01841 | 384 | FunFam | protein TWIN LOV 1 | 242 | 379 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi2g01841 | Vivi-Chr2 | 85513393 | 85517549 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi2g01841 | 228 | 358 | AGC Kinase Gene Family | AT5G58140 | 40.909 | 5.14e-29 | 117 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi2g01841 | - | - | gmx:100785562 | 530.791 |