Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01814 ATGAGTCGCAAGAGAGACAGCCCCTACTTTTCCCGCCACGACTTCAAGCGCCGCCGTCCGTTGCCGGAACCAGCGGAGGAAGATAGACCCACCACCAGGCCGACGCCTCCTTCTGCGGTACTCGTCATGGGTCTCCCTCTTGACTGCTCCGTCCTCGATCTCAAGTCTCGATTTGAGATCTACGGCTCCATCTGTCGCATCCGTATCGACCGTGACGCCGTCGGTTATATAACCTACCGGAATAAAGACTCGGCTGATGCCGCCATCGCCGCTGGCCACGATCCTTCCTTTGGCGTCACCGTCAATTCCAAAAAGGTTCAGGTGTTGTGGGCAACAGATCCTCTAGCCATGTGGAGAGAAGGAGTTGGTAAAAACAAAGATAGTGTGTCTACGTCAAAGCTTGTGCGGGCTGATGTACCTTTGAGGCGACATGGAAGAAATAATAAACTTGCGTCAGCTATAGGGAATACCAAAAGTAGTAATGATGGTTCTGGTAGCTCAGTTCTTGAAGTTCCTTCCAGAGGTAGAGAAATTGTTGCTTATGATGATATAATAAGGAATCAGAAATTAAATAGAGTGATGGAAGAAAGAGATCAAGTGAAAAGTGAAGAGAATGGAGAATCAGAAGAAAGAATATGGAGTTGGGGTGCTGGAACAGATGGCCAATTAGGAACAGGTAGACTTCAAGATGAACATCTCCCTCAACAAATATCTTTCCCCTCTGTCTCTTCACTTGCCTGCGGCGGCGCTCATGTCATCGCCTTAACCTCCGATGGGAAGGTATTGTCGTGGGGTAGGGGCAATTCTGGTCAACTAGGCCATGGAGAGGTTGTCAATAACATGTTGTGTCCCAAGGCTGTAACATCATTGGACAACTACTTCATAACCCATGTCTCTGCTGGTTGGAGCCACTCAGGTTTTGTTTCAGATACTGGTAGCCTGTTCACTTGCGGAGATGGCTCCTTTGGTCAACTTGGACATGGCGTCTACGCCTCTCACTGTTCCCCTGTCAAAGTGCCATGCTTTGTTGATCAGCATGTTGCGAAGGTAGCATGTGGAATGCGGCATTCTCTTGTCTTGTTGAAAGGTTGTCTTTCAAATCAAGTTTATGGATTTGGCTCTGGAAAGCGTGGTCAATTGGGTGTCTCCAAAGATAAAATCAAATCTATTAATCTTCCCAAAATTGTTAGTGGATTTGACGATATTGATATAGTTGATATTGCTGCAAATGGAGATCATAGTGCTGCATTATCTGTTGATGGGAATCTTTACACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATTCTCACCTTCCGCAACGCTTAAACTCTACGTTGAAATTCACTAAAGCCACTCTAGGGTGGAACCATGCTTTAGCTATGACTGGTGATGGGGAGGCTTACATGCTTGGTGGCAACCACCTCGGAGTGCTTAGTGGTGTTCACAATGAATGTCCAGCTAAGAAGTTAAATGATTCAAGAGAAGTCAACTTGGAAAAAGTCCCTGGCCTTGAAGGATCAAAGATTACTGATATAGCTACTGGAGCCGAGCATTCCGTCCTTGTCACAGAGAATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAGCTAGGGTTAGGGGATGATGGTGATCGAATCAGTCCTGTTACAGTAAGTCTTGGTTACGATCTGAAAGAAGCGGCATCAACAAGAGTCTATTGCGGAAGTGGCTTCACATTTGCTTTGACCAAGCCCTAG 1743 0.4682 MSRKRDSPYFSRHDFKRRRPLPEPAEEDRPTTRPTPPSAVLVMGLPLDCSVLDLKSRFEIYGSICRIRIDRDAVGYITYRNKDSADAAIAAGHDPSFGVTVNSKKVQVLWATDPLAMWREGVGKNKDSVSTSKLVRADVPLRRHGRNNKLASAIGNTKSSNDGSGSSVLEVPSRGREIVAYDDIIRNQKLNRVMEERDQVKSEENGESEERIWSWGAGTDGQLGTGRLQDEHLPQQISFPSVSSLACGGAHVIALTSDGKVLSWGRGNSGQLGHGEVVNNMLCPKAVTSLDNYFITHVSAGWSHSGFVSDTGSLFTCGDGSFGQLGHGVYASHCSPVKVPCFVDQHVAKVACGMRHSLVLLKGCLSNQVYGFGSGKRGQLGVSKDKIKSINLPKIVSGFDDIDIVDIAANGDHSAALSVDGNLYTWGRGFKGFEDSHLPQRLNSTLKFTKATLGWNHALAMTGDGEAYMLGGNHLGVLSGVHNECPAKKLNDSREVNLEKVPGLEGSKITDIATGAEHSVLVTENGEIKTWGWGEHGQLGLGDDGDRISPVTVSLGYDLKEAASTRVYCGSGFTFALTKP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01814 580 SMART rrm1_1 39 109 IPR000504 GO:0003723
Vivi2g01814 580 MobiDBLite consensus disorder prediction 196 216 - -
Vivi2g01814 580 PRINTS Chromosome condensation regulator RCC1 signature 521 542 IPR000408 -
Vivi2g01814 580 PRINTS Chromosome condensation regulator RCC1 signature 454 472 IPR000408 -
Vivi2g01814 580 PRINTS Chromosome condensation regulator RCC1 signature 211 227 IPR000408 -
Vivi2g01814 580 PRINTS Chromosome condensation regulator RCC1 signature 261 277 IPR000408 -
Vivi2g01814 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Vivi2g01814 580 Gene3D - 2 115 IPR012677 -
Vivi2g01814 580 CDD RRM_SF 40 108 - -
Vivi2g01814 580 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 512 522 IPR000408 -
Vivi2g01814 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Vivi2g01814 580 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 280 578 - -
Vivi2g01814 580 Pfam Regulator of chromosome condensation (RCC1) repeat 312 360 IPR000408 -
Vivi2g01814 580 Pfam Regulator of chromosome condensation (RCC1) repeat 211 255 IPR000408 -
Vivi2g01814 580 Pfam Regulator of chromosome condensation (RCC1) repeat 368 417 IPR000408 -
Vivi2g01814 580 Pfam Regulator of chromosome condensation (RCC1) repeat 526 577 IPR000408 -
Vivi2g01814 580 Pfam Regulator of chromosome condensation (RCC1) repeat 258 307 IPR000408 -
Vivi2g01814 580 Gene3D - 432 579 IPR009091 -
Vivi2g01814 580 Gene3D - 186 431 IPR009091 -
Vivi2g01814 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 363 IPR000408 -
Vivi2g01814 580 MobiDBLite consensus disorder prediction 196 210 - -
Vivi2g01814 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 526 580 IPR000408 -
Vivi2g01814 580 SUPERFAMILY RCC1/BLIP-II 210 478 IPR009091 -
Vivi2g01814 580 MobiDBLite consensus disorder prediction 1 38 - -
Vivi2g01814 580 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 350 360 IPR000408 -
Vivi2g01814 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 420 IPR000408 -
Vivi2g01814 580 SUPERFAMILY RNA-binding domain, RBD 26 118 IPR035979 GO:0003676
Vivi2g01814 580 MobiDBLite consensus disorder prediction 1 30 - -
Vivi2g01814 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 210 258 IPR000408 -
Vivi2g01814 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 259 311 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01814 Vivi-Chr2 83431260 83439199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01814 1 185 Homeobox Transcription Factor Family AT1G27050 52.195 5.90e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01814 - - gmx:100793672 886.715