Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01802 ATGGGTAGTGTGAATTACTACAGTATTCTTAAGGTGAACCCTGATGCAAGCTATGAACTGATCAAGAAATCGTTTAAGAATTTATCAAGGAAATGGCACCCTGATATGGTTAATCAAGAGCCTTTGAGGAGAAAAGAGTTTGAGGCAACGTTTAAGAGAATCTGTGAGGCTTTTGAGGTTCTTAGTGATCCTAAGAAGCGTAGGATCTATGATCTGTATGGGAAATATCCAGTGAATTTGGAGAATGGTGATGGGAATAATAATAATAATAATAATATGAAGGTTGATGATGAAGCTGTTGTTGGAGTTGTTGAAAGTGACTTGGCATGTTCTCTTGAGGACCTTTATTGTGGTTGCAGAAAGAAGGTCAATCTTGTAAGAAATGTTCCTGATGAATTTGGAGAGTTGAAGTCGGAAGAAGAAGTCTTGAAGATCACCATTAATCCTGGATGGAAAAAGGGCACAAAAATCACTTTTCCTGGGAAAGGAAACCAGCTACCTGGCTCTCGTCCACTTGATCTGGTTTTTGTGGTGAATGAGAAACCGCATCCTGTATTCCAGAGGGATAGACATGATTTGGTAATGAGACAAAAGATATCATTTCTTGAATCTCTTGTTGGAACGACTCTCAACATAACAACCTTGGATCGAAGAAATATCACAGTTGAAGTTACTGATATTGTGACGCCAGGCTACGAGAAGGTGATCCCGGATGAAGGTATGCCACTTGCAAAGGAGCCAGGCAAGAGAGGAAATCTAAGAATCAAGTTTGATGTTGAGTTTCCATCAAATTTGACCTCACAACAGAAACATGATGTGAGAAGGATTTTGAATGAGGCTGATTATAACTAA 852 0.392 MGSVNYYSILKVNPDASYELIKKSFKNLSRKWHPDMVNQEPLRRKEFEATFKRICEAFEVLSDPKKRRIYDLYGKYPVNLENGDGNNNNNNNMKVDDEAVVGVVESDLACSLEDLYCGCRKKVNLVRNVPDEFGELKSEEEVLKITINPGWKKGTKITFPGKGNQLPGSRPLDLVFVVNEKPHPVFQRDRHDLVMRQKISFLESLVGTTLNITTLDRRNITVEVTDIVTPGYEKVIPDEGMPLAKEPGKRGNLRIKFDVEFPSNLTSQQKHDVRRILNEADYN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01802 283 Pfam DnaJ domain 5 71 IPR001623 -
Vivi2g01802 283 PRINTS DnaJ domain signature 25 40 IPR001623 -
Vivi2g01802 283 PRINTS DnaJ domain signature 7 25 IPR001623 -
Vivi2g01802 283 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vivi2g01802 283 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vivi2g01802 283 FunFam DNAJ heat shock family protein 182 277 - -
Vivi2g01802 283 SMART dnaj_3 4 66 IPR001623 -
Vivi2g01802 283 CDD DnaJ 5 63 IPR001623 -
Vivi2g01802 283 SUPERFAMILY Chaperone J-domain 2 85 IPR036869 -
Vivi2g01802 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 271 IPR008971 GO:0006457|GO:0051082
Vivi2g01802 283 Gene3D - 102 181 - -
Vivi2g01802 283 Gene3D - 183 263 - -
Vivi2g01802 283 Pfam DnaJ C terminal domain 104 262 IPR002939 -
Vivi2g01802 283 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 5 277 - -
Vivi2g01802 283 FunFam Dnaj homolog subfamily b member 101 181 - -
Vivi2g01802 283 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Vivi2g01802 283 CDD DnaJ_C 104 265 - -
Vivi2g01802 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 105 193 IPR008971 GO:0006457|GO:0051082
Vivi2g01802 283 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vivi2g01802 283 Gene3D DnaJ domain 1 97 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01802 Vivi-Chr2 82856892 82858870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01802 6 73 C2H2 Transcription Factor Family AT1G74250 34.783 1.81e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01802 2 82856892 82858870 Vivi2g01802 2 82856892 82858870 ECH