Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01800 ATGATTCTACCAAAAATAGAAGAATGTGCTAGACAAATGATTGCAAACAACTCGGAAGGACGTGACATATTAGAGATGGATGTGTTGTTTCATGTTATAGAAGAGGATGGAGAAGATATAAACCAAGATGATGATGGTCAAGCCCAACAAGTTGTCGATTTGTTGGAGAAATTACAGAGTGATTATCTTCCTTCCAATTCAACAAGACAATGTTCAATTTGTTTGGAGGAGTTTTGCGCTACATCCAATCTTGTTTCTACAAAATGCTCACATGTTTTTCATGAAAAATGTATGGTCTCGTGGATACAAAAATGCACTCATAATTCATTAACTTATTCTTGTCCATTGTGTCGGTGTCAAATTCCGTGA 369 0.3577 MILPKIEECARQMIANNSEGRDILEMDVLFHVIEEDGEDINQDDDGQAQQVVDLLEKLQSDYLPSNSTRQCSICLEEFCATSNLVSTKCSHVFHEKCMVSWIQKCTHNSLTYSCPLCRCQIP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01800 122 SMART ring_2 71 117 IPR001841 -
Vivi2g01800 122 PANTHER RING ZINC FINGER PROTEIN-RELATED 47 121 - -
Vivi2g01800 122 SUPERFAMILY RING/U-box 70 121 - -
Vivi2g01800 122 ProSiteProfiles Zinc finger RING-type profile. 71 118 IPR001841 -
Vivi2g01800 122 Pfam Ring finger domain 70 118 IPR001841 -
Vivi2g01800 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01800 Vivi-Chr2 82807527 82807895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01800 65 122 C3H Transcription Factor Family AT1G18760 34.483 2.57e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01800 - K22378 psat:127102848 144.436