Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01788 ATGACAAAGGAAATTGGAGGATCGGGTACAAAGAAACCAATAACCAATGATGATGCCAAGATGTATATAAAAGAAGTAAAGATTGCATTTAAAGATGAGAAGGACAAGTACCGTGAATTTCTAATGATTATGAAAGATTTTCAAATGAGAAGAATTGATATACATGGCGTGATGGAAAGAGTGAAGGAGTTGCTCAAATGTCACAAAGAATTATTATTAAAATTTGATATTTTTTTACCTGAAGGTTTAGAAATCAAATCTCCAGCGAAGAAGCCAAAGGTGCCTGAAGTGAATAAAGAAAAAGCAGAAAAGTATTTGGGCAAAGTAAAGACTCGATTTCGACGTGAACCTTGTGTATACGATTTATTTCTAGATATATTGAGTATGTACAAAAACAACAATATGAGTCTTAAGGAGATGTGTGAAAAGGTTTTTTCACTTTTTAAAAACCACCGTGATCTAGTCGATGGATTTATTGATTTTCTTCCAAAAGATAGCTCGTAA 504 0.3254 MTKEIGGSGTKKPITNDDAKMYIKEVKIAFKDEKDKYREFLMIMKDFQMRRIDIHGVMERVKELLKCHKELLLKFDIFLPEGLEIKSPAKKPKVPEVNKEKAEKYLGKVKTRFRREPCVYDLFLDILSMYKNNNMSLKEMCEKVFSLFKNHRDLVDGFIDFLPKDSS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01788 167 Gene3D Paired amphipathic helix 102 163 IPR036600 GO:0006355
Vivi2g01788 167 Gene3D Paired amphipathic helix 18 80 IPR036600 GO:0006355
Vivi2g01788 167 Pfam Paired amphipathic helix repeat 119 162 IPR003822 GO:0006355
Vivi2g01788 167 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Vivi2g01788 167 SUPERFAMILY PAH2 domain 10 81 IPR036600 GO:0006355
Vivi2g01788 167 ProSiteProfiles PAH domain profile. 94 165 IPR003822 GO:0006355
Vivi2g01788 167 PANTHER SIN3B-RELATED 15 167 IPR039774 GO:0003714
Vivi2g01788 167 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Vivi2g01788 167 FunFam Paired amphipathic helix SIN3-like protein 94 165 - -
Vivi2g01788 167 SUPERFAMILY PAH2 domain 95 164 IPR036600 GO:0006355
Vivi2g01788 167 FunFam Paired amphipathic helix protein Sin3 18 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01788 Vivi-Chr2 82082859 82084136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01788 5 85 WRKY Transcription Factor Family AT4G12020 38.272 6.94e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01788 PAH 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01788 K11644 - vvo:131649408 181.8