Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01751 ATGGATCCAGCACCAATAATCGACACTCCGCCCAATACGCTGTCGTTTCACCCACCGGAGATCTGGCACTTCCCACCCTCCACAACACCGCTGTTCGAGCAAGGCTTCGGAGCTTTCGCAACGGAAGTTCCCGGTAAAGAACTTGCTGGTTCTGAGCTCAGACTTCCGAACCATGGCCGGAAAAGGCGCGGCGCGGAGGAGGATTCTGTTAAAGGCGTTTCCACCAGCAACGACGTGAATGATGATGATGGTGGTGATGGAAAAAGGATGAAGACATCAGGGAAGAGTAAAGATGAAGAAGAAGTAGTAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAAAAACTACGGATGAGAGGCATCCTAAGCAAGATTATATTCATGTTCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGAGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCATCACCAAGTAGAGTTTTTGTCGATGAAGCTGGAAGCAGTAAATTCAAGATTGACACCTGGTATTGAAATGTTTCCTCCTAAAGCTTTTAATCAACAAACATATGATGCAACCCCCATACCATTTGCTTCACAAGCTACAAGAGAGTACAGCCGCGGTTCATCACCGGAATGGTTACATATGCAGGTGGGAGGTGGTTTTGAAAGATCAACGTAA 771 0.454 MDPAPIIDTPPNTLSFHPPEIWHFPPSTTPLFEQGFGAFATEVPGKELAGSELRLPNHGRKRRGAEEDSVKGVSTSNDVNDDDGGDGKRMKTSGKSKDEEEVVGEENSSGKHAEKTTDERHPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRLTPGIEMFPPKAFNQQTYDATPIPFASQATREYSRGSSPEWLHMQVGGGFERST 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01751 256 SMART finulus 141 191 IPR011598 GO:0046983
Vivi2g01751 256 MobiDBLite consensus disorder prediction 53 69 - -
Vivi2g01751 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 203 IPR036638 GO:0046983
Vivi2g01751 256 MobiDBLite consensus disorder prediction 81 123 - -
Vivi2g01751 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 185 IPR011598 GO:0046983
Vivi2g01751 256 MobiDBLite consensus disorder prediction 42 123 - -
Vivi2g01751 256 CDD bHLH_AtBPE_like 125 208 - -
Vivi2g01751 256 FunFam Basic helix-loop-helix transcription factor 132 204 - -
Vivi2g01751 256 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 67 224 IPR024097 GO:0006355
Vivi2g01751 256 Gene3D - 132 206 IPR036638 GO:0046983
Vivi2g01751 256 Pfam Helix-loop-helix DNA-binding domain 139 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01751 Vivi-Chr2 80788361 80791690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01751 16 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.905 7.13e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g01751 HLH 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01751 - - psat:127119455 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01751 2 80788361 80791690 Vivi2g01751 2 80788361 80791690 ECH
Vivi2g01751 2 80788361 80791690 Vivi4g03329 4 148766921 148767909 PCT