Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01750 ATGGATCCAGCACCAATAATCGACACTCCGCCCAATACGCTGTCGTTTCACCCACCGGAGATCTGGCACTTCCCACCCTCCACAACACCGCTGTTCGAGCAAGGCTTCGGAGCTTTCGCAACGGAAGTTCCCGGTAAAGAACTTGCTGGTTCTGAGCTCAGACTTCCGAACCATGGCCGGAAAAGGCGCGGCGCGGAGGAGGATTCTGTTAAAGGCGTTTCCACCAGCAACGACGTGGTAATTTCTCATTCCAATAATGATGATGATGGTGGTGATGGAAAAAGGATGAAGACATCAGGGAAGAGTAAAGATGAAGAAGAAGTAGTAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAAAAACTACGGATGAGAGGCATCCTAAGCAAGATTATATTCATGTTCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGAGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCATCACCAAGTAGAGTTTTTGTCGATGAAGCTGGAAGCAGTAAATTCAAGATTGACACCTGGTATTGAAATGTTTCCTCCTAAAGCTTTTAATCAACAAACATATGATGCAACCCCCATACCATTTGCTTCACAAGCTACAAGAGAGTACAGCCGCGGTTCATCACCGGAATGGTTACATATGCAGGTGGGAGGTGGTTTTGAAAGATCAACGTAA 789 0.4499 MDPAPIIDTPPNTLSFHPPEIWHFPPSTTPLFEQGFGAFATEVPGKELAGSELRLPNHGRKRRGAEEDSVKGVSTSNDVVISHSNNDDDGGDGKRMKTSGKSKDEEEVVGEENSSGKHAEKTTDERHPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRLTPGIEMFPPKAFNQQTYDATPIPFASQATREYSRGSSPEWLHMQVGGGFERST 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01750 262 FunFam Basic helix-loop-helix transcription factor 138 210 - -
Vivi2g01750 262 SMART finulus 147 197 IPR011598 GO:0046983
Vivi2g01750 262 MobiDBLite consensus disorder prediction 53 69 - -
Vivi2g01750 262 Pfam Helix-loop-helix DNA-binding domain 145 191 IPR011598 GO:0046983
Vivi2g01750 262 MobiDBLite consensus disorder prediction 47 131 - -
Vivi2g01750 262 CDD bHLH_AtBPE_like 131 214 - -
Vivi2g01750 262 MobiDBLite consensus disorder prediction 85 131 - -
Vivi2g01750 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 209 IPR036638 GO:0046983
Vivi2g01750 262 Gene3D - 138 212 IPR036638 GO:0046983
Vivi2g01750 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 191 IPR011598 GO:0046983
Vivi2g01750 262 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 230 IPR024097 GO:0006355
Vivi2g01750 262 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01750 Vivi-Chr2 80788361 80791694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01750 1 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 48.485 7.60e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g01750 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01750 - - psat:127119455 422.935