Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01743 ATGTCTCTATCCCGCACGTGCTCGCAGTGCGGCAACAACGGCCACAATTCCCGAACATGCAACGACGGATGCAACGACGGCGGAGGAGAAAACAGCATCATGATTTTCGGTGTCCGACTCACCGGAGGAAGCAACACCACCACCACCAACCACAACAACCCGTTCAGAAAAAGTGCCAGCATGACCAATCTCTCTCAATACGATCAACCCACGCCTCAAGATTCCAACCCCGCCGACGCCGGTTACGTCTCCGATGACATCGTTCATGCCTCCGGCAGATCCCGTGAACGCAAACGAGGTGTTCCTTGGACGGAAGAAGAACACAAGCTGTTCTTGTTGGGATTGCAACAGGTTGGTAGAGGTGATTGGAGAGGAATTTCTAGAAGCTTTGTTAAAACTCGTACACCAACTCAGGTGGCAAGTCATGCTCAGAAGTATTTTCTGCGCCGTCATAATCAGAATCGCCGCCGCCGGAGATCTAGTCTCTTTGATATCACCACCGATACAGTGATTGAATCTTCTACTATGATGGAAGAAGAGCAATTTCAGCAAGAAACGGTAGTGCCGCTGCCTCCACCTGGCCCCAGCGTATATCCGTCATCACATTACGGTGGCATCCCCGGGACACCTTTTCCGATGGGTCTTAGTCCGGTAGCATTGCCGGTGCCGGTGATGAGTGGTGAAAGAGCAGCCAAGCCAATTAGGCCAACACCAATGTTGCCTCCTTCATCTAAGATGGCTAGTTTGAATTTGAGAGATAAAGCTGCTTCTTCTTCATCTTCTTCCATTGAGCCTTTGCCATTGTCATTGAAGCTGCAACCTCCGTCAAAGGATCATTCGCCGGATAGTAGCGGCCATTCGTCGCCGTCTTCTTCGTCATCGTCGGCTTTTAAAACTATGTCTGCAGGGAAGTATGGTGGCGGGGGTGGGGATAGCATTATCAGTGTTGCCTGA 954 0.5105 MSLSRTCSQCGNNGHNSRTCNDGCNDGGGENSIMIFGVRLTGGSNTTTTNHNNPFRKSASMTNLSQYDQPTPQDSNPADAGYVSDDIVHASGRSRERKRGVPWTEEEHKLFLLGLQQVGRGDWRGISRSFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVIESSTMMEEEQFQQETVVPLPPPGPSVYPSSHYGGIPGTPFPMGLSPVALPVPVMSGERAAKPIRPTPMLPPSSKMASLNLRDKAASSSSSSIEPLPLSLKLQPPSKDHSPDSSGHSSPSSSSSSAFKTMSAGKYGGGGGDSIISVA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01743 317 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Vivi2g01743 317 FunFam transcription factor MYB1R1 101 152 - -
Vivi2g01743 317 Gene3D - 101 152 - -
Vivi2g01743 317 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Vivi2g01743 317 CDD SANT 102 147 IPR001005 -
Vivi2g01743 317 MobiDBLite consensus disorder prediction 250 267 - -
Vivi2g01743 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Vivi2g01743 317 ProSiteProfiles Zinc finger CCHC-type profile. 7 20 IPR001878 GO:0003676|GO:0008270
Vivi2g01743 317 SMART sant 99 149 IPR001005 -
Vivi2g01743 317 PANTHER TRANSCRIPTION FACTOR KUA1 5 267 - -
Vivi2g01743 317 MobiDBLite consensus disorder prediction 250 317 - -
Vivi2g01743 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677
Vivi2g01743 317 ProSiteProfiles SANT domain profile. 98 151 IPR017884 -
Vivi2g01743 317 MobiDBLite consensus disorder prediction 276 300 - -
Vivi2g01743 317 SUPERFAMILY Homeodomain-like 97 150 IPR009057 -
Vivi2g01743 317 MobiDBLite consensus disorder prediction 64 78 - -
Vivi2g01743 317 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01743 Vivi-Chr2 80457223 80459799 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi2g01743 Myb_DNA-binding 6.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01743 - - tpra:123909419 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01743 2 80457223 80459799 Vivi2g01743 2 80457223 80459799 ECH