Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01725 ATGAAAGATATCAAGAAAAAAAGAGCTGAAATAGCGAGTATGCTGGCAAGAGTGAAGGAAATGTTTGAAGGGCATGGAGAATTGTTATTGAAATTTAATACCTATTTGTCAGATGAATTTGAAATCGCACCTTCGCCAGAGAAGCCAGAAGTGAAGAAGCCAGAAGTAAATATTGAATATGCTAGGAAATATTTGGACAATGTCAAGACTCGTTTTCAAGGTGATCCTAACGTTTACAAATCGTTTTTAACTATACTGAATATGTATAGAAACAAAGAAAAGAGTCGTGAGGAGGTTTTACAAATGGTTATTTCACTTTTTAAAGACCAGTCTGATCTTGTTGAGGGGTTTATTGACTTTCTTCCATGA 369 0.3469 MKDIKKKRAEIASMLARVKEMFEGHGELLLKFNTYLSDEFEIAPSPEKPEVKKPEVNIEYARKYLDNVKTRFQGDPNVYKSFLTILNMYRNKEKSREEVLQMVISLFKDQSDLVEGFIDFLP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01725 122 ProSiteProfiles PAH domain profile. 54 122 IPR003822 GO:0006355
Vivi2g01725 122 Gene3D Paired amphipathic helix 61 122 IPR036600 GO:0006355
Vivi2g01725 122 FunFam Paired amphipathic helix SIN3-like protein 53 122 - -
Vivi2g01725 122 Pfam Paired amphipathic helix repeat 78 121 IPR003822 GO:0006355
Vivi2g01725 122 SUPERFAMILY PAH2 domain 52 122 IPR036600 GO:0006355
Vivi2g01725 122 PANTHER SIN3B-RELATED 1 122 IPR039774 GO:0003714
Vivi2g01725 122 Gene3D Paired amphipathic helix 1 36 IPR036600 GO:0006355
Vivi2g01725 122 SUPERFAMILY PAH2 domain 1 39 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01725 Vivi-Chr2 79371194 79374374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01725 1 47 WRKY Transcription Factor Family AT4G12020 44.681 7.19e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01725 PAH 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01725 K11644 - vvo:131646330 235.343